Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.6e-186 656.0 348 100.0
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 7.7e-128 461.1 355 74.6
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 4.0e-108 395.6 345 65.8
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 6.6e-103 378.3 378 61.6
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 5.4e-89 332.0 333 60.1
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.3e-87 326.6 337 59.6
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 5.8e-83 312.0 335 56.7
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.9e-82 309.7 334 57.8
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 3.0e-79 299.7 311 59.8
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 5.6e-78 295.4 333 54.7
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 9.6e-78 294.7 341 56.9
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-77 294.3 337 51.9
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.4e-76 290.0 298 60.4
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 4.0e-76 289.3 344 58.7
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 1.2e-75 287.7 330 54.2
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.0e-75 287.0 268 64.9
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.3e-74 284.3 308 56.5
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.2e-74 283.5 342 53.5
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 3.8e-74 282.7 342 55.6
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.4e-74 282.0 334 53.0
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 6.4e-74 282.0 308 55.5
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 8.4e-74 281.6 302 57.9
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.4e-73 280.8 295 58.6
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.9e-73 280.4 336 53.9
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 4.2e-73 279.3 334 53.3
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.1e-72 276.9 341 52.2
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 2.7e-72 276.6 348 50.0
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.7e-72 276.6 320 54.7
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.6e-72 275.8 356 51.7
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.0e-71 274.6 330 53.9
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 8.7e-71 271.6 288 57.6
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 8.7e-71 271.6 354 50.3
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.5e-70 270.8 339 51.3
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 5.6e-70 268.9 255 62.0
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 5.6e-70 268.9 339 51.0
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 5.6e-70 268.9 284 58.1
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 2.1e-69 266.9 300 56.7
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 1.8e-68 263.8 260 58.5
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 9.0e-68 261.5 342 51.2
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 2.0e-67 260.4 195 70.3
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.0e-67 260.4 345 51.0
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 2.6e-67 260.0 307 52.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 9.9e-67 258.1 173 76.3
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.9e-65 253.8 277 55.2
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.9e-65 253.8 349 47.9
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 2.4e-65 253.4 188 69.7
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 3.2e-65 253.1 287 54.7
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 9.3e-65 251.5 179 72.6
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 3.5e-64 249.6 166 77.7
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 4.6e-64 249.2 323 50.8
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 6.0e-64 248.8 177 72.9
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.7e-63 247.3 311 52.1
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.3e-63 246.9 193 66.3
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.3e-63 246.9 171 71.3
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 5.1e-63 245.7 310 49.0
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 5.1e-63 245.7 177 70.6
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 5.1e-63 245.7 177 70.6
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 8.7e-63 245.0 189 67.2
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 8.7e-63 245.0 189 67.2
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 8.7e-63 245.0 189 67.2
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 8.7e-63 245.0 259 52.5
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 8.7e-63 245.0 170 71.2
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 1.1e-62 244.6 180 69.4
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.1e-62 244.6 329 49.5
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.5e-62 243.4 195 66.2
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 3.3e-62 243.0 184 69.0
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 7.4e-62 241.9 171 71.9
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 7.4e-62 241.9 273 50.9
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 9.6e-62 241.5 169 74.0
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.3e-61 241.1 167 71.3
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.3e-61 241.1 304 52.6
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 2.1e-61 240.4 238 58.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.6e-61 239.6 320 47.2
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.1e-61 238.4 188 65.4
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 8.1e-61 238.4 189 67.7
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 8.1e-61 238.4 287 52.6
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.4e-60 237.7 165 72.1
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 2.4e-60 236.9 169 72.2
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 6.9e-60 235.3 161 72.7
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.5e-59 234.2 168 73.8
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 3.4e-59 233.0 198 63.1
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 7.6e-59 231.9 256 55.1
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 2.2e-58 230.3 265 51.3
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.2e-58 230.3 169 71.0
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 4.2e-57 226.1 254 50.8
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 9.3e-57 224.9 172 66.3
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.1e-56 223.8 172 66.9
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.0e-55 221.5 163 67.5
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.0e-55 221.5 348 44.5
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 3.0e-55 219.9 293 47.1
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.3e-54 216.1 162 70.4
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.3e-53 214.5 314 47.8
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.1e-53 213.8 161 67.7
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 6.2e-53 212.2 162 68.5
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 6.9e-52 208.8 287 44.3
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 4.9e-50 202.6 151 68.2
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 4.9e-50 202.6 151 68.2
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 6.5e-50 202.2 304 45.7
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.9e-47 193.0 177 61.0
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 5.7e-46 189.1 163 60.1
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 2.1e-45 187.2 166 57.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 9.0e-44 181.8 124 72.6
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 7.6e-43 178.7 175 55.4
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 7.6e-43 178.7 164 57.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.1e-41 174.9 232 50.0
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 2.8e-37 160.2 104 77.9
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 6.3e-37 159.1 115 70.4
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 8.5e-34 148.7 123 64.2
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 1.4e-28 131.3 162 44.4
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-28 131.0 110 64.5
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 6.9e-28 129.0 164 43.3
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-24 117.9 108 60.2
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 2.6e-22 110.5 71 80.3
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 4.4e-22 109.8 148 50.7
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.7e-21 107.8 64 81.2
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.2e-19 101.7 183 44.8
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 4.7e-16 89.7 72 65.3
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 6.7e-15 85.9 106 49.1
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 8.8e-15 85.5 222 35.1
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 4.1e-12 76.6 111 40.5
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.2e-11 75.1 152 41.4
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.0e-11 74.3 40 87.5
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 7.7e-11 72.4 39 87.2
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 7.7e-11 72.4 128 43.8
Haze_02796 Corylus avellana HOM05D006300 ORTHO05D007623 5.0e-10 69.7 70 52.9
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 7.2e-09 65.9 75 50.7
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 7.2e-09 65.9 111 45.0
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 2.0e-06 57.8 61 49.2
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 2.6e-06 57.4 39 66.7


User provided reference genes

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