Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.4e-166 589.7 333 100.0
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.3e-135 486.9 340 83.8
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.5e-133 479.9 338 82.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.2e-132 476.1 340 82.1
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 8.2e-127 457.6 339 80.5
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.4e-126 456.1 346 78.0
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.6e-125 452.6 350 76.6
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 3.4e-125 452.2 337 79.8
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 4.9e-124 448.4 336 79.2
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 6.5e-124 448.0 349 77.4
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 8.4e-124 447.6 342 78.7
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.8e-121 439.9 331 77.0
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.5e-120 436.0 338 76.0
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 4.3e-120 435.3 327 78.9
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.3e-119 433.7 337 78.0
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 4.8e-119 431.8 340 77.1
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.1e-118 430.6 349 75.4
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.4e-118 430.3 361 72.3
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 4.1e-118 428.7 339 75.5
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 5.3e-118 428.3 340 74.7
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.3e-116 423.7 338 76.6
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 3.8e-116 422.2 337 77.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 5.0e-116 421.8 333 76.0
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.1e-115 420.6 373 70.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.4e-115 420.2 293 83.6
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.1e-114 416.4 336 75.6
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.6e-114 415.2 338 73.7
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 7.9e-114 414.5 319 77.4
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.0e-113 414.1 347 72.9
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 5.1e-113 411.8 341 75.1
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.0e-112 409.8 340 73.5
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 3.3e-112 409.1 341 71.3
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.7e-111 406.8 349 72.2
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 4.8e-111 405.2 323 75.5
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.1e-110 402.5 347 71.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.1e-110 402.1 338 74.0
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 4.5e-109 398.7 338 73.4
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.5e-109 398.7 317 75.7
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.3e-108 397.1 323 74.0
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.1e-107 394.0 333 72.7
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.4e-107 393.7 347 71.2
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.4e-107 393.7 339 71.4
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.6e-106 390.2 341 71.8
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.4e-105 387.1 346 71.7
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.8e-105 386.7 287 79.4
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.0e-105 386.0 291 78.4
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.1e-104 384.0 333 72.4
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.9e-100 369.4 346 67.1
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.1e-99 367.5 340 69.4
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.5e-99 366.3 322 71.4
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 2.1e-98 363.2 332 69.9
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 2.2e-95 353.2 372 61.6
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.2e-95 353.2 337 66.8
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 8.2e-95 351.3 374 61.5
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.4e-94 350.5 287 72.1
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.8e-94 350.1 372 61.3
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 9.1e-94 347.8 284 73.6
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 9.1e-94 347.8 293 73.4
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.6e-93 346.3 307 68.4
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.3e-92 344.0 353 62.9
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 3.8e-92 342.4 342 62.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.8e-92 342.4 350 64.9
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 5.0e-92 342.0 310 70.3
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.9e-91 340.1 340 65.6
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 4.2e-91 339.0 302 67.5
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.6e-90 337.0 241 80.5
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.1e-90 336.7 334 65.6
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.1e-90 335.1 301 66.8
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.0e-89 332.8 342 62.0
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.0e-88 330.1 340 64.7
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 2.6e-88 329.7 327 63.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.4e-88 329.3 301 65.8
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 4.4e-88 328.9 301 65.8
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 9.7e-88 327.8 309 67.0
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 4.8e-87 325.5 351 61.3
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 6.3e-87 325.1 354 62.7
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 6.3e-87 325.1 389 58.1
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 3.1e-86 322.8 395 57.7
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.0e-85 320.1 341 60.7
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 2.0e-85 320.1 340 61.8
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 4.5e-85 318.9 339 61.1
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.9e-85 318.5 272 70.6
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.7e-85 318.2 272 70.2
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.3e-84 317.4 339 60.8
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.7e-84 317.0 304 63.8
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 5.0e-84 315.5 366 60.7
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 6.5e-84 315.1 338 61.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.2e-83 312.8 256 74.2
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 5.5e-83 312.0 339 59.9
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 7.2e-83 311.6 324 61.4
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.6e-82 309.3 272 69.5
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-80 304.3 370 56.2
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 9.8e-80 301.2 361 57.6
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.8e-79 298.9 313 62.6
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.1e-78 297.7 326 59.2
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.8e-78 297.0 361 56.5
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.7e-77 293.1 334 58.7
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 4.5e-77 292.4 340 58.8
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 4.5e-77 292.4 340 58.8
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.5e-77 292.4 218 76.6
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 5.0e-76 288.9 346 55.8
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.2e-75 285.8 350 55.7
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.6e-74 283.9 310 61.3
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.0e-73 281.2 297 60.6
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.6e-72 276.6 333 55.0
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 9.8e-72 274.6 212 72.2
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.7e-68 263.8 198 73.2
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 6.6e-68 261.9 231 66.2
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 4.7e-66 255.8 419 47.7
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 3.1e-65 253.1 205 68.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 3.1e-65 253.1 205 68.8
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 4.0e-65 252.7 384 51.6
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.4e-62 244.2 258 61.2
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.4e-62 244.2 275 58.2
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 6.6e-60 235.3 343 51.9
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.5e-59 233.4 479 41.1
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.2e-58 231.1 191 75.4
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.7e-58 229.2 245 58.4
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.7e-58 229.2 339 50.1
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.6e-56 223.4 337 48.1
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.2e-55 220.3 338 51.2
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.9e-54 217.2 343 49.9
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 4.1e-54 216.1 315 51.7
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 3.0e-52 209.9 295 51.2
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.9e-52 209.5 293 52.6
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.1e-51 208.0 448 39.1
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.3e-51 206.5 161 70.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.4e-49 201.1 335 46.0
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.4e-48 196.4 205 62.4
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 5.4e-46 189.1 334 47.3
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 3.0e-44 183.3 436 39.0
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 6.6e-44 182.2 283 47.3
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.4e-41 174.5 145 70.3
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 5.6e-35 152.5 208 54.8
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.1e-25 120.2 145 51.7
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.6e-24 115.5 172 43.6
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.1e-22 111.7 97 67.0
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 4.2e-22 109.8 93 74.2
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 8.4e-15 85.5 87 58.6
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.7e-11 72.8 120 54.2
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 5.7e-11 72.8 56 69.6
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.4e-09 67.4 210 30.0
Cpa.g.c45152 Carica papaya HOM05D004913 ORTHO05D006150 1.5e-08 64.7 88 55.7
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.0e-07 62.0 95 52.6
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 1.3e-07 61.6 57 64.9
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.8e-07 60.1 95 52.6
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.8e-07 60.1 95 52.6
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 5.0e-07 59.7 171 32.2
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.2e-06 57.0 95 50.5


User provided reference genes

Program Settings