Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 0.0e+00 1208.0 593 100.0
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 0.0e+00 1112.4 592 89.9
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 5.2e-302 1040.4 595 83.0
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.4e-299 1032.3 596 83.4
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 7.1e-299 1030.0 593 83.0
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.1e-298 1028.5 593 82.5
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 3.0e-297 1024.6 597 82.7
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 6.6e-297 1023.5 593 82.8
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 1.9e-296 1021.9 593 83.0
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 5.3e-294 1013.8 593 81.6
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.5e-293 1012.3 597 82.4
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 4.5e-293 1010.7 593 80.8
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 8.4e-292 1006.5 593 81.3
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.9e-291 1005.4 593 81.5
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 4.2e-291 1004.2 593 81.6
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 7.9e-290 1000.0 593 79.8
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.8e-289 998.8 594 81.0
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 2.3e-289 998.4 593 80.6
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 7.4e-288 993.4 593 79.3
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 1.4e-286 989.2 593 79.3
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 2.0e-285 985.3 596 80.2
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 3.4e-285 984.6 593 80.1
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.7e-284 982.2 593 79.1
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 3.8e-284 981.1 601 79.0
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 1.1e-280 969.5 630 75.9
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 4.8e-279 964.1 594 78.3
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 9.0e-278 959.9 633 74.2
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.2e-277 959.5 594 77.1
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.9e-276 954.9 632 72.8
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 8.4e-276 953.4 669 71.4
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.1e-275 953.0 595 77.5
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.3e-273 945.3 595 77.0
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 7.4e-272 940.3 595 75.5
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 2.8e-271 938.3 595 76.6
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 3.1e-270 934.9 596 75.5
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 6.9e-270 933.7 581 77.3
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 6.9e-270 933.7 605 75.7
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 9.0e-270 933.3 598 74.9
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.3e-268 929.5 593 75.9
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.9e-268 928.3 554 81.8
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 5.5e-267 924.1 593 75.2
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 5.5e-267 924.1 593 75.0
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 9.3e-267 923.3 593 74.9
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 1.2e-266 922.9 593 74.4
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 3.6e-266 921.4 593 73.9
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 4.6e-266 921.0 652 72.2
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.3e-265 919.5 592 75.5
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 3.9e-265 917.9 595 75.1
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.9e-264 915.6 553 80.5
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 1.5e-261 906.0 596 75.0
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 2.6e-261 905.2 615 72.8
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.9e-259 899.0 646 69.8
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 9.4e-259 896.7 595 73.8
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.6e-258 894.8 595 74.1
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 6.1e-258 894.0 595 74.1
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 1.0e-257 893.3 597 72.9
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.6e-256 888.6 590 73.6
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 6.5e-252 874.0 569 72.2
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 1.2e-250 869.8 594 70.2
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 3.9e-249 864.8 594 69.7
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 2.2e-247 859.0 597 71.2
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 2.8e-247 858.6 593 71.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 1.1e-246 856.7 593 69.0
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.9e-243 845.9 534 76.0
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.8e-241 839.3 585 71.5
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 3.0e-241 838.6 595 70.4
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.2e-240 836.6 593 71.3
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 2.2e-239 832.4 595 69.9
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 6.3e-239 830.9 546 73.6
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 5.3e-238 827.8 595 67.1
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 5.3e-238 827.8 608 70.6
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.1e-235 820.1 595 66.7
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 6.1e-234 814.3 599 68.3
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.2e-231 805.8 520 76.9
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.1e-230 803.5 599 68.3
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 3.1e-230 802.0 530 72.3
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 7.0e-230 800.8 593 65.8
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 5.9e-229 797.7 597 66.0
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 5.0e-228 794.7 597 65.8
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 6.5e-228 794.3 598 64.7
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 6.5e-228 794.3 599 65.8
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 8.6e-228 793.9 528 73.5
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 7.2e-227 790.8 578 68.3
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 2.0e-224 782.7 592 64.4
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 5.7e-224 781.2 687 59.4
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 7.5e-224 780.8 509 74.1
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 2.8e-223 778.9 597 64.5
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 4.9e-223 778.1 593 64.2
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.1e-222 776.9 596 64.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.3e-219 765.0 483 76.0
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 8.9e-217 757.3 599 62.3
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 1.2e-216 756.9 615 62.4
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.5e-216 756.5 573 67.2
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 1.5e-211 740.0 597 62.0
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 2.3e-209 732.6 556 63.8
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.7e-180 636.7 531 61.6
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 3.0e-164 582.8 379 73.1
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.4e-145 520.8 391 65.5
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 2.9e-143 513.1 607 47.8
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 3.8e-135 486.1 530 51.9
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 2.3e-132 476.9 456 53.7
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 1.7e-127 460.7 599 42.7
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 4.7e-109 399.4 245 77.6
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 7.8e-96 355.5 204 82.8
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.3e-87 328.2 251 62.2
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.3e-82 311.6 291 56.7
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-76 291.6 617 33.9
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.9e-65 254.6 175 66.9
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 4.2e-49 200.3 162 63.6
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.7e-42 178.3 134 64.2
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 9.0e-36 156.0 121 60.3
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 1.7e-34 151.8 110 73.6
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.9e-33 148.3 81 80.2
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 4.2e-25 120.6 69 75.4
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 1.0e-18 99.4 83 61.4
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 2.7e-16 91.3 52 86.5
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 8.0e-16 89.7 315 22.5
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 3.7e-13 80.9 55 61.8
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 5.9e-11 73.6 45 68.9
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-09 69.3 57 57.9
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 4.2e-09 67.4 33 93.9
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 4.0e-07 60.8 444 23.4
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 8.8e-07 59.7 78 43.6
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 9.7e-06 56.2 32 84.4


User provided reference genes

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