Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 3.6e-140 503.1 259 100.0
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.1e-112 411.8 257 82.9
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 3.7e-108 396.7 257 80.2
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 2.2e-92 344.4 257 68.5
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 1.9e-88 331.3 256 67.2
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.9e-88 331.3 258 67.8
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 7.5e-85 319.3 259 68.0
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.2e-84 317.8 261 66.7
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.1e-83 313.5 260 67.3
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 1.3e-81 308.5 260 62.7
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.1e-80 305.4 256 62.5
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 3.2e-80 303.9 263 61.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 9.4e-80 302.4 257 65.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.8e-78 298.1 261 62.1
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 3.7e-76 290.4 257 61.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 3.1e-75 287.3 257 61.9
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 7.0e-75 286.2 260 59.6
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 4.5e-74 283.5 256 59.4
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 1.7e-73 281.6 258 59.7
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 2.2e-73 281.2 256 62.1
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 2.9e-73 280.8 256 59.4
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 5.0e-73 280.0 212 67.5
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.9e-72 278.1 257 60.7
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.9e-72 278.1 257 60.7
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.2e-72 277.3 257 60.7
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 7.2e-72 276.2 260 57.3
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 9.5e-72 275.8 257 58.0
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.6e-71 275.0 258 58.5
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 3.6e-71 273.9 265 59.2
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 3.0e-70 270.8 259 59.1
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 8.8e-70 269.2 257 57.6
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 8.8e-70 269.2 258 57.0
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 2.0e-69 268.1 259 58.3
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 2.6e-69 267.7 259 57.9
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.4e-69 267.3 259 58.3
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 4.4e-69 266.9 256 57.0
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 5.7e-69 266.5 256 56.2
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 5.7e-69 266.5 256 56.6
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 9.8e-69 265.8 261 54.8
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 4.9e-68 263.5 168 73.2
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.8e-67 261.5 167 73.7
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 1.8e-67 261.5 186 69.4
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 3.1e-67 260.8 257 54.1
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.4e-67 260.0 259 54.8
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 3.5e-66 257.3 258 55.0
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.7e-65 255.0 168 70.8
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.1e-64 252.3 199 62.3
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 2.5e-64 251.1 168 69.0
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 2.5e-64 251.1 215 58.1
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 3.3e-64 250.8 168 69.6
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 3.3e-64 250.8 256 54.3
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 4.3e-64 250.4 168 68.5
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 4.3e-64 250.4 169 68.6
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.6e-64 250.0 257 52.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.2e-63 248.8 256 52.0
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 4.7e-63 246.9 168 67.3
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 8.0e-63 246.1 211 59.2
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 8.9e-62 242.7 257 55.6
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 9.8e-61 239.2 258 52.7
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.7e-60 238.4 161 68.3
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 4.9e-60 236.9 166 68.7
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.4e-59 235.3 180 60.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 7.0e-59 233.0 185 59.5
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 7.0e-59 233.0 185 60.0
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.2e-58 232.3 168 62.5
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.2e-58 232.3 168 62.5
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 1.6e-58 231.9 185 59.5
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 4.6e-58 230.3 169 62.7
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 4.6e-58 230.3 167 64.1
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 3.9e-57 227.3 197 55.8
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 8.6e-57 226.1 204 54.9
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 9.5e-56 222.6 256 49.6
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 5.8e-53 213.4 208 52.9
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 7.5e-53 213.0 154 61.0
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 8.3e-52 209.5 179 57.0
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 7.0e-51 206.5 131 72.5
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 9.5e-48 196.1 141 66.7
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 2.3e-46 191.4 168 58.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.3e-44 185.7 138 61.6
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.7e-44 185.3 178 53.9
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.1e-38 166.0 112 70.5
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 7.1e-35 153.3 88 80.7
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 1.3e-33 149.1 179 43.0
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.4e-30 139.0 188 44.7
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.5e-29 135.6 163 49.1
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 7.6e-29 133.3 80 77.5
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.7e-28 132.1 184 41.8
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 8.4e-28 129.8 136 47.1
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 1.2e-26 125.9 188 37.2
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.3e-24 117.5 72 77.8
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.3e-20 105.9 64 78.1
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 3.2e-11 74.7 44 79.5
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 9.6e-08 63.2 126 28.6
Gorai.010G192200 Gossypium raimondii HOM05D005973 ORTHO05D007285 1.3e-07 62.8 183 28.4
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 1.6e-07 62.4 126 29.4
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 2.1e-07 62.0 140 23.6
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.1e-07 62.0 133 28.6
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 2.8e-07 61.6 128 29.7
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 2.8e-07 61.6 156 28.2
MSTRG.10167 Avicennia marina HOM05D007409 ORTHO05D009264 3.7e-07 61.2 112 33.0
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 3.7e-07 61.2 140 23.6
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 3.7e-07 61.2 173 24.9
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 8.2e-07 60.1 140 25.0
Gohir.A06G158900 Gossypium hirsutum HOM05D005973 ORTHO05D007285 8.2e-07 60.1 142 29.6
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 8.2e-07 60.1 202 20.8
A05p32770 Brassica napus HOM05D002444 ORTHO05D040376 1.4e-06 59.3 54 48.1
BraA05t22099Z Brassica rapa HOM05D002444 ORTHO05D040376 1.4e-06 59.3 54 48.1
Lsat_1_v5_gn_8_99341 Lactuca sativa HOM05D008470 ORTHO05D010644 1.4e-06 59.3 139 28.8
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 2.4e-06 58.5 134 31.3
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 2.4e-06 58.5 133 29.3
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 3.1e-06 58.2 148 25.0
Lalb_Chr19g0125351 Lupinus albus HOM05D002986 ORTHO05D003966 3.1e-06 58.2 131 27.5
SGA_v2.0_scaffold64G22096 Striga asiatica HOM05D007409 ORTHO05D009264 3.1e-06 58.2 138 28.3
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 4.0e-06 57.8 230 21.7
Prupe.2G106500 Prunus persica HOM05D002986 ORTHO05D003966 4.0e-06 57.8 125 29.6
Thecc.10G003600 Theobroma cacao HOM05D005973 ORTHO05D007285 4.0e-06 57.8 142 28.9
AL5G28320 Arabidopsis lyrata HOM05D007409 ORTHO05D009264 5.3e-06 57.4 119 27.7
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 5.3e-06 57.4 119 27.7
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 5.3e-06 57.4 134 28.4
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 5.3e-06 57.4 122 26.2
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 5.3e-06 57.4 183 27.9
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 5.3e-06 57.4 139 23.0
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 6.9e-06 57.0 148 25.0
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 6.9e-06 57.0 160 23.1
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 6.9e-06 57.0 126 28.6
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 6.9e-06 57.0 181 23.8
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 6.9e-06 57.0 181 23.8
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 9.0e-06 56.6 134 28.4
Gohir.D06G164800 Gossypium hirsutum HOM05D005973 ORTHO05D007285 9.0e-06 56.6 183 27.3
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 9.0e-06 56.6 197 23.9
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 9.0e-06 56.6 195 22.6


User provided reference genes

Program Settings