Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.3e-210 736.1 359 100.0
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 1.4e-185 652.9 350 89.7
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.9e-185 652.5 350 90.0
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 2.1e-184 649.0 354 88.1
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 2.7e-184 648.7 350 89.7
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 6.6e-183 644.0 350 89.1
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.3e-182 641.3 350 89.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 7.3e-182 640.6 350 89.1
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 6.2e-181 637.5 350 87.4
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.1e-180 636.7 350 88.9
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.4e-180 636.3 350 88.0
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.4e-180 636.3 350 88.0
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.4e-180 636.3 350 88.9
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.4e-180 636.3 350 88.3
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 3.1e-180 635.2 352 87.8
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 2.6e-179 632.1 350 87.4
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.2e-178 629.0 350 87.1
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 4.9e-178 627.9 350 87.4
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.4e-177 626.3 350 87.1
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 3.2e-177 625.2 350 86.9
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.2e-176 623.2 350 85.7
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.6e-176 622.9 350 86.3
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 7.8e-176 620.5 351 87.2
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.0e-175 620.2 350 85.7
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.7e-175 617.1 351 85.2
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.7e-175 617.1 351 85.2
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.9e-174 615.9 349 86.0
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.6e-174 614.4 351 85.8
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 7.3e-174 614.0 366 82.5
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 7.3e-174 614.0 350 85.4
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 9.6e-174 613.6 350 84.6
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.3e-173 613.2 350 85.1
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.3e-173 613.2 350 84.3
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.3e-173 613.2 350 84.6
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.3e-173 613.2 350 84.6
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.6e-173 612.8 351 84.6
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.6e-173 612.8 351 84.6
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.1e-173 612.5 350 85.1
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.1e-173 612.5 350 85.4
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 2.8e-173 612.1 351 84.3
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 2.8e-173 612.1 351 84.3
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.6e-173 611.7 351 84.6
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 6.2e-173 610.9 350 84.6
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 1.1e-172 610.1 350 83.7
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 4.0e-172 608.2 352 85.2
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 9.0e-172 607.1 350 84.6
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.2e-171 606.7 351 85.2
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 2.0e-171 605.9 351 83.5
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 2.6e-171 605.5 351 84.9
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 4.5e-171 604.7 351 84.9
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 5.8e-171 604.4 350 83.7
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 9.9e-171 603.6 351 84.6
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.7e-170 602.8 389 77.4
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.7e-170 602.8 351 82.9
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 2.9e-170 602.1 350 83.4
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.9e-169 599.4 350 83.7
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 3.2e-169 598.6 350 82.9
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 9.3e-169 597.0 347 83.9
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.3e-169 597.0 351 83.5
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 9.3e-169 597.0 351 82.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.6e-168 596.3 351 82.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 1.6e-168 596.3 350 82.6
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 2.1e-168 595.9 346 84.1
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 2.7e-168 595.5 350 82.3
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 3.5e-168 595.1 350 82.0
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.0e-168 594.3 354 82.2
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.0e-167 593.6 351 81.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.0e-167 593.6 353 81.3
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 2.3e-167 592.4 351 82.1
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 2.3e-167 592.4 351 82.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.3e-167 592.4 350 82.9
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.9e-167 591.7 350 82.3
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 3.9e-167 591.7 350 82.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 8.7e-167 590.5 353 81.6
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.5e-166 589.7 351 82.6
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.9e-166 589.3 344 83.1
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.9e-166 589.3 350 82.6
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.9e-166 589.3 353 81.6
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.3e-166 588.2 353 81.3
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 9.6e-166 587.0 342 82.5
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 1.3e-165 586.6 353 82.4
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.6e-165 586.3 351 80.3
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 3.7e-165 585.1 352 81.8
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.8e-165 584.7 364 80.5
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 6.2e-165 584.3 350 81.7
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.1e-164 583.6 339 83.2
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.4e-164 583.2 342 81.9
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-164 583.2 342 81.9
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-164 583.2 342 81.9
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.4e-164 583.2 342 81.9
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.4e-164 583.2 342 81.9
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.4e-164 583.2 353 82.4
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.8e-164 582.8 350 82.6
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 3.1e-164 582.0 351 79.5
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.5e-163 579.7 350 81.4
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.5e-163 579.7 350 79.4
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.6e-163 578.9 351 81.8
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 3.4e-163 578.6 344 81.4
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.4e-163 578.6 351 81.5
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 9.9e-163 577.0 350 79.7
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 9.9e-163 577.0 344 81.4
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.7e-162 576.2 350 80.0
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.7e-162 576.2 365 77.8
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 4.9e-162 574.7 350 78.9
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.1e-161 573.5 344 82.0
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.4e-161 572.4 350 78.0
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.2e-161 571.6 351 79.2
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 7.1e-161 570.9 350 81.1
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.8e-159 566.2 351 79.2
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 6.7e-159 564.3 350 77.1
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.8e-157 558.9 352 79.8
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.8e-157 558.9 351 79.2
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 4.0e-156 555.1 350 77.7
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.0e-155 552.7 350 79.7
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 3.4e-155 552.0 340 79.4
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.0e-154 550.4 342 79.5
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.8e-154 548.5 351 78.1
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 4.9e-154 548.1 346 79.5
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 8.4e-154 547.4 351 78.1
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 1.1e-153 547.0 350 76.9
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.9e-153 546.2 350 77.1
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.5e-153 545.8 413 69.0
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 3.2e-153 545.4 374 74.3
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.7e-152 542.3 350 74.3
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 3.5e-152 542.0 351 75.5
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 4.6e-152 541.6 350 76.6
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.3e-151 540.0 350 76.0
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.8e-151 539.7 350 74.0
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 8.7e-151 537.3 351 76.9
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.7e-150 534.6 351 74.6
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 2.4e-148 529.3 341 77.4
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 5.5e-145 518.1 347 74.1
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 9.4e-145 517.3 344 73.8
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.6e-144 516.5 344 72.4
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 2.7e-144 515.8 345 73.0
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.1e-140 502.3 344 71.8
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.0e-138 497.3 377 70.3
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 2.7e-136 489.2 350 67.4
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.0e-135 487.3 279 84.6
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 6.7e-135 484.6 350 65.7
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.4e-134 481.9 281 83.6
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.3e-133 480.3 280 82.5
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 7.0e-132 474.6 350 64.9
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.0e-131 473.0 349 65.0
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.5e-131 471.9 349 64.8
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.9e-130 469.2 350 64.3
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 8.5e-130 467.6 353 67.4
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 9.4e-129 464.2 278 82.4
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 8.8e-127 457.6 351 64.7
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.6e-126 456.1 280 79.6
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.2e-125 453.0 342 63.7
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 1.7e-122 443.4 268 81.0
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.9e-122 442.6 347 62.5
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.2e-121 438.7 263 79.5
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.7e-120 436.0 344 67.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 4.7e-120 435.3 257 83.7
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 6.1e-120 434.9 339 64.0
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.3e-117 427.2 307 70.0
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 2.0e-115 419.9 238 84.9
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 3.6e-112 409.1 285 71.2
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 5.2e-111 405.2 273 72.2
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 7.5e-110 401.4 365 54.8
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.6e-107 393.7 352 53.4
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 3.8e-106 389.0 255 76.9
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.8e-100 370.2 382 51.6
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 6.6e-98 361.7 198 87.4
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 8.6e-98 361.3 349 51.9
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.3e-89 332.8 197 80.2
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 1.1e-79 301.2 253 63.6
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 5.4e-76 288.9 180 79.4
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 6.0e-75 285.4 171 83.0
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.6e-72 276.2 159 84.3
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 2.7e-51 206.8 210 58.1
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.5e-46 191.0 369 32.0
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 3.9e-42 176.4 113 80.5
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 1.6e-40 171.0 428 27.6
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 2.0e-38 164.1 120 66.7
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.0e-37 161.8 148 59.5
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 5.0e-37 159.5 120 65.0
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 4.6e-35 152.9 385 25.7
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.3e-34 151.4 113 66.4
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.2e-30 138.3 289 30.4
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.5e-30 137.9 84 76.2
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 2.2e-08 64.3 68 52.9
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 2.2e-08 64.3 49 69.4


User provided reference genes

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