Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1292.7 644 100.0
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 2.6e-310 1068.1 647 84.2
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 6.3e-309 1063.5 635 85.2
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 2.9e-298 1028.1 635 81.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 5.8e-262 907.5 634 73.8
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 6.0e-259 897.5 635 72.1
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 3.4e-254 881.7 636 72.2
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 1.7e-250 869.4 638 68.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 6.6e-250 867.5 655 67.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 8.6e-250 867.1 638 70.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 2.5e-249 865.5 639 70.3
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.8e-247 859.4 637 69.9
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 3.1e-247 858.6 643 68.7
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 4.0e-247 858.2 636 68.6
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 2.0e-246 855.9 738 62.1
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.4e-245 850.9 637 69.5
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.4e-245 850.5 645 68.4
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 4.1e-244 848.2 637 68.6
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 5.4e-244 847.8 637 68.6
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 1.6e-243 846.3 644 68.0
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 7.8e-243 844.0 644 68.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.7e-242 840.5 644 67.9
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 2.6e-238 828.9 690 63.3
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 4.2e-236 821.6 634 64.5
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.1e-235 819.3 625 68.0
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 6.0e-235 817.8 635 65.0
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 3.0e-234 815.5 637 65.1
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 6.6e-234 814.3 634 64.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 6.6e-234 814.3 638 66.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 1.9e-233 812.8 634 65.5
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 9.6e-233 810.4 635 64.7
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-232 810.1 701 61.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 1.1e-231 807.0 634 64.5
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 3.1e-231 805.4 636 64.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 5.3e-231 804.7 631 65.8
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 2.0e-230 802.7 642 63.4
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 2.9e-229 798.9 634 64.4
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 1.4e-228 796.6 635 63.6
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 1.9e-228 796.2 634 63.4
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 2.4e-228 795.8 648 62.3
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.0e-226 790.4 634 63.2
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.3e-226 789.3 656 61.9
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 4.0e-223 778.5 692 60.5
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 3.8e-221 771.9 633 63.3
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 4.6e-219 765.0 636 63.7
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 4.5e-214 748.4 634 61.0
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 4.9e-213 745.0 637 60.3
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 4.6e-211 738.4 645 60.3
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 1.9e-209 733.0 634 60.9
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 1.8e-207 726.5 634 60.4
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 1.2e-206 723.8 634 59.9
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 1.2e-206 723.8 634 59.1
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 2.6e-206 722.6 662 59.1
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 3.4e-206 722.2 640 58.6
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 8.5e-205 717.6 640 58.3
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 3.2e-204 715.7 632 60.3
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 5.5e-204 714.9 637 59.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 3.6e-203 712.2 634 61.0
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 7.9e-203 711.1 641 59.1
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 3.7e-200 702.2 634 58.4
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 2.0e-198 696.4 635 57.8
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 1.3e-197 693.7 708 54.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.7e-197 693.3 639 57.3
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 4.7e-195 685.3 643 58.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 7.4e-193 677.9 630 56.5
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 1.3e-192 677.2 659 55.1
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 6.3e-192 674.9 643 56.9
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 9.1e-191 671.0 642 57.2
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 9.1e-191 671.0 539 62.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 7.2e-188 661.4 643 56.3
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 9.4e-188 661.0 643 56.3
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 1.6e-187 660.2 642 56.9
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 2.1e-187 659.8 643 55.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 8.0e-187 657.9 655 55.3
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 1.0e-186 657.5 645 55.3
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 3.9e-186 655.6 644 56.8
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 2.6e-185 652.9 643 56.8
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 8.2e-184 647.9 641 56.2
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 3.2e-180 636.0 637 53.4
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 3.2e-180 636.0 642 55.0
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 1.7e-176 623.6 647 55.2
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 3.7e-176 622.5 666 53.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 1.6e-174 617.1 633 53.4
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 2.9e-173 612.8 666 52.9
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 7.5e-169 598.2 639 50.2
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.3e-168 597.4 633 54.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 5.0e-165 585.5 536 60.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 1.6e-163 580.5 695 48.9
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 6.6e-149 531.9 403 67.7
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 3.2e-143 513.1 535 52.1
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.3e-136 491.1 514 52.3
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 2.9e-136 490.0 633 47.1
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 4.3e-124 449.5 447 57.3
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 7.3e-124 448.7 312 70.5
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 6.9e-114 415.6 350 61.4
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.2e-111 406.8 398 57.5
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.2e-105 388.3 312 61.9
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 1.9e-95 354.4 385 50.9
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 6.1e-94 349.4 282 66.7
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 4.1e-82 310.1 263 62.0
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 9.1e-82 308.9 665 31.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 9.7e-76 288.9 677 31.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 2.0e-73 281.2 671 31.1
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 4.2e-71 273.5 502 33.9
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 2.3e-69 267.7 164 76.8
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 3.0e-69 267.3 645 30.9
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 5.5e-55 219.9 510 34.5
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.7e-49 201.1 252 49.6
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.0e-48 199.1 233 46.8
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.3e-47 194.1 326 38.7
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.8e-42 178.3 181 54.1
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 3.2e-42 177.6 126 68.3
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.6e-36 157.9 169 55.0
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 3.4e-36 157.5 122 58.2
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.1e-34 152.5 154 51.3
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 1.1e-31 142.5 155 52.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.3e-29 134.8 168 47.0
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.3e-29 134.8 209 38.3
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 4.4e-28 130.6 231 40.3
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 4.4e-28 130.6 132 55.3
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 2.9e-27 127.9 179 45.3
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.9e-26 125.2 829 22.1
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.2e-25 122.5 92 65.2
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 7.3e-23 113.2 80 67.5
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 1.4e-21 109.0 74 68.9
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.0e-20 105.1 81 61.7
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 3.4e-20 104.4 76 63.2
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.4e-20 104.4 129 48.8
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 3.4e-20 104.4 86 55.8
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.4e-11 73.6 61 63.9
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-10 72.4 171 31.6
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 4.2e-10 70.9 71 46.5
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.7e-09 68.2 98 45.9
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 6.6e-08 63.5 42 76.2
CAN.G3101.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-07 62.8 72 55.6
SHI03334 Sapria himalayana HOM05D003492 ORTHO05D369695 3.6e-06 57.8 124 33.1
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 4.8e-06 57.4 45 53.3


User provided reference genes

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