Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 9.7e-95 350.1 176 100.0
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.2e-90 334.7 176 93.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.6e-84 315.5 165 93.9
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.5e-84 314.7 176 88.6
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 4.5e-84 314.7 176 89.2
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.7e-83 312.8 176 89.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 5.0e-83 311.2 176 88.1
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.5e-83 310.5 177 88.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 8.5e-83 310.5 178 88.2
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 8.0e-81 303.9 176 85.2
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.0e-80 303.5 180 87.2
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 8.8e-80 300.4 177 83.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 8.8e-80 300.4 175 85.1
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.2e-79 300.1 176 84.7
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.0e-79 299.3 178 83.7
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.7e-79 297.7 176 84.1
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 9.7e-79 297.0 176 84.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 9.7e-79 297.0 176 84.1
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.2e-78 295.8 181 83.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.8e-78 295.4 178 83.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.7e-78 295.0 178 82.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 4.8e-78 294.7 176 83.5
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.3e-78 294.3 178 82.6
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.4e-77 293.1 180 83.9
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.8e-77 292.7 178 84.3
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.4e-77 292.4 179 83.8
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 5.3e-77 291.2 179 82.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 5.3e-77 291.2 179 82.1
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.6e-76 289.7 176 81.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.6e-76 289.7 176 80.7
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.6e-76 289.7 174 81.6
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.0e-76 289.3 176 81.8
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.0e-76 289.3 174 81.6
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.0e-76 289.3 174 81.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 4.5e-76 288.1 172 84.9
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 5.9e-76 287.7 177 80.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 5.9e-76 287.7 175 82.3
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-75 286.6 174 81.0
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.2e-75 285.8 178 82.6
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.9e-75 285.4 176 80.1
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.9e-75 285.4 172 82.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 5.0e-75 284.6 174 80.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 8.5e-75 283.9 177 81.4
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 8.5e-75 283.9 180 78.3
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.5e-74 282.3 177 79.7
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.5e-74 282.3 176 82.4
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 4.2e-74 281.6 177 80.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 4.2e-74 281.6 177 80.8
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.5e-74 281.2 177 80.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 5.5e-74 281.2 182 81.9
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 5.5e-74 281.2 177 81.4
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 5.5e-74 281.2 173 82.1
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 7.2e-74 280.8 177 80.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 9.4e-74 280.4 177 80.2
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 9.4e-74 280.4 177 80.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.2e-73 280.0 180 80.0
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.2e-73 280.0 177 80.8
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.1e-73 279.3 178 80.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.1e-73 279.3 178 80.9
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.0e-72 276.9 177 80.2
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.4e-72 276.6 176 80.1
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-72 275.8 177 79.1
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.3e-72 275.8 180 76.7
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 3.0e-72 275.4 176 80.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 5.2e-72 274.6 164 81.7
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.2e-72 274.6 185 79.5
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.2e-71 273.5 185 78.9
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.0e-71 272.7 179 79.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.6e-71 272.3 173 78.6
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.6e-71 272.3 178 77.5
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.4e-71 271.9 185 77.8
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.4e-71 271.9 185 77.8
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 9.8e-71 270.4 177 78.5
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-70 270.0 169 79.3
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.7e-70 269.6 193 74.6
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.7e-70 269.6 185 77.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 3.7e-70 268.5 185 76.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.3e-70 267.7 179 76.0
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.3e-70 267.7 179 76.0
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 8.3e-70 267.3 179 77.1
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 3.1e-69 265.4 178 77.5
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 5.4e-69 264.6 177 75.7
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 7.0e-69 264.2 179 75.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 9.1e-69 263.8 178 74.7
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.2e-68 263.5 178 74.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.6e-68 263.1 177 76.8
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.6e-68 263.1 181 76.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.7e-68 262.3 181 73.5
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.7e-68 262.3 176 75.6
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 3.5e-68 261.9 178 75.8
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.3e-67 260.0 177 74.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.7e-67 259.6 176 78.4
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.9e-67 258.8 177 74.0
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.5e-67 257.7 180 72.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.5e-67 257.7 172 77.3
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 8.6e-67 257.3 178 73.6
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.2e-65 253.4 179 73.2
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.2e-65 253.4 179 73.2
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.1e-65 252.7 180 72.2
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.8e-65 252.3 173 72.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.7e-65 251.5 181 71.3
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 8.0e-65 250.8 178 72.5
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 8.0e-65 250.8 176 72.2
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.8e-64 249.6 178 72.5
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.8e-64 249.6 178 73.0
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.3e-64 249.2 182 70.3
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 4.0e-64 248.4 178 71.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 5.2e-64 248.1 184 72.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 8.8e-64 247.3 172 72.1
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 8.8e-64 247.3 184 73.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.2e-63 246.9 171 71.3
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 180 73.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 71.3
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.3e-62 243.4 173 71.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.2e-62 242.7 178 71.9
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.9e-62 241.5 172 74.4
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.9e-62 241.5 174 70.7
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 6.3e-62 241.1 151 74.8
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.3e-62 241.1 178 71.3
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.0e-61 237.7 177 70.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 9.2e-61 237.3 153 77.8
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 7.8e-60 234.2 167 71.9
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.3e-59 233.4 180 70.0
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.7e-59 233.0 170 71.8
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 2.3e-59 232.6 132 87.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 5.6e-58 228.0 252 52.0
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.6e-57 226.5 158 75.9
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 2.8e-57 225.7 180 66.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.0e-56 223.8 194 64.9
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.4e-56 223.4 169 68.0
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 121 84.3
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 7.8e-52 207.6 177 63.3
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.3e-48 196.1 143 62.9
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 8.9e-48 194.1 180 57.8
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 2.6e-47 192.6 193 58.0
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 5.8e-47 191.4 174 57.5
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.7e-46 188.7 154 60.4
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 6.4e-46 188.0 182 58.8
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.4e-45 186.0 186 55.9
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.0e-39 166.4 89 86.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 4.9e-38 161.8 176 53.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.1e-37 160.6 175 52.6
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.1e-37 158.7 86 86.0
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-36 156.0 86 83.7
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.0e-35 154.1 117 72.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.2e-33 147.1 129 62.0
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 4.7e-33 145.2 89 78.7
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 6.2e-33 144.8 112 66.1
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.0e-31 139.8 144 54.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.8e-30 135.6 129 58.1
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 8.1e-25 117.9 127 49.6
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 9.0e-24 114.4 125 44.8
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.5e-23 113.6 115 54.8
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.5e-23 113.6 115 54.8
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.5e-23 113.6 84 67.9
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 7.6e-23 111.3 90 64.4
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 6.4e-22 108.2 105 48.6
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.5e-18 97.1 146 36.3
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-16 89.7 46 89.1
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 9.3e-13 77.8 65 61.5
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 9.3e-13 77.8 80 51.2
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.0e-12 75.1 78 53.8
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.3e-11 73.2 191 34.6
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 2.3e-11 73.2 89 38.2
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.5e-10 69.7 85 48.2


User provided reference genes

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