Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.3e-120 434.1 216 100.0
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.0e-101 371.3 216 85.2
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.5e-100 369.8 216 84.7
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.5e-100 369.0 216 85.2
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 8.5e-93 344.0 214 80.4
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.0e-90 337.0 216 75.9
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.0e-90 337.0 216 75.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 5.7e-89 331.3 216 76.4
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 9.8e-89 330.5 213 79.3
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 2.8e-88 328.9 216 75.5
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.3e-88 327.4 216 74.5
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.6e-86 323.2 221 73.8
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.7e-86 322.4 216 73.1
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.7e-86 322.4 216 74.1
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.7e-86 322.4 220 73.2
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 4.5e-86 321.6 216 74.5
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.5e-86 321.6 216 74.1
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 5.9e-86 321.2 216 74.1
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 7.7e-86 320.9 222 73.9
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.3e-85 320.1 216 75.9
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.7e-85 319.7 216 72.7
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 3.8e-85 318.5 218 72.5
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 5.0e-85 318.2 214 73.8
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 5.0e-85 318.2 214 73.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.0e-85 318.2 216 74.1
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 5.0e-85 318.2 214 73.4
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 6.5e-85 317.8 216 73.6
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 6.5e-85 317.8 214 74.3
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.5e-84 316.6 217 71.9
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 3.2e-84 315.5 216 71.8
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 7.2e-84 314.3 216 73.1
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 9.4e-84 313.9 214 72.0
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.2e-83 313.5 216 71.8
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.2e-83 313.5 216 75.5
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.1e-83 312.8 213 74.2
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.7e-83 312.4 216 72.2
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.7e-83 311.6 216 73.6
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 6.1e-83 311.2 216 71.3
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 6.1e-83 311.2 216 73.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.0e-82 310.5 216 72.7
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.4e-82 310.1 214 72.0
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.3e-82 309.3 216 70.8
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 4.0e-82 308.5 218 72.0
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 5.2e-82 308.1 215 73.0
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 5.2e-82 308.1 213 71.8
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.2e-81 307.0 215 72.6
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.2e-81 307.0 218 70.2
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.2e-81 307.0 214 71.5
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.5e-81 306.6 215 72.6
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 2.6e-81 305.8 216 72.2
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 3.4e-81 305.4 216 72.7
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.4e-81 305.4 218 72.0
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.4e-81 305.1 214 73.4
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 4.4e-81 305.1 217 70.5
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 9.8e-81 303.9 217 74.7
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 9.8e-81 303.9 218 69.7
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.7e-80 303.1 213 70.4
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 4.9e-80 301.6 216 70.4
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 6.3e-80 301.2 218 71.6
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.8e-79 299.7 213 70.9
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 2.0e-78 296.2 213 70.4
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 4.5e-78 295.0 212 71.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.9e-78 294.7 199 74.9
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 5.9e-78 294.7 228 68.4
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 7.7e-78 294.3 219 68.0
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 1.0e-77 293.9 218 67.0
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 2.9e-77 292.4 216 71.3
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 5.0e-77 291.6 222 65.3
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 5.0e-77 291.6 228 67.5
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 6.6e-77 291.2 212 68.9
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 8.6e-77 290.8 214 69.2
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.9e-76 289.7 214 66.8
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.9e-76 289.7 214 71.0
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 5.6e-76 288.1 207 69.1
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 5.6e-76 288.1 211 68.7
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 7.3e-76 287.7 206 69.9
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 7.3e-76 287.7 223 64.1
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 7.3e-76 287.7 204 72.1
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.8e-75 285.8 220 65.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.8e-75 285.8 213 67.1
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 3.6e-75 285.4 224 65.2
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 3.6e-75 285.4 224 65.2
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 8.0e-75 284.3 220 64.1
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 8.0e-75 284.3 207 69.1
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.4e-74 283.5 223 64.1
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.3e-74 282.7 184 76.1
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 2.3e-74 282.7 208 68.8
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.3e-74 282.7 212 67.0
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 3.0e-74 282.3 224 64.7
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.2e-73 280.4 224 64.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.2e-73 280.4 224 64.3
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.2e-73 280.4 199 70.4
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.0e-73 279.6 217 65.4
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.4e-73 278.9 183 75.4
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 4.4e-73 278.5 224 62.9
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.4e-73 278.5 202 71.3
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 7.5e-73 277.7 221 63.3
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 9.8e-73 277.3 224 62.5
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.3e-72 276.9 222 63.1
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 2.2e-72 276.2 206 69.9
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 6.4e-72 274.6 216 64.4
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.4e-72 274.6 249 59.4
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.4e-72 274.6 205 68.3
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 2.4e-71 272.7 221 62.0
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 2.0e-70 269.6 223 65.0
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.7e-70 269.2 216 63.4
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 3.5e-70 268.9 209 63.6
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 2.3e-69 266.2 182 70.9
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 3.0e-69 265.8 225 64.0
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.1e-67 259.6 184 69.0
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.1e-67 259.6 216 61.1
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.8e-67 259.2 183 68.3
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.2e-65 253.8 217 58.5
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.6e-65 252.7 256 56.6
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.6e-65 252.7 256 56.6
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 4.4e-65 251.9 170 71.8
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 9.8e-65 250.8 186 66.7
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 8.3e-64 247.7 171 70.8
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.4e-63 245.0 182 69.2
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.3e-61 240.4 220 60.0
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.1e-60 237.3 143 80.4
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 2.5e-60 236.1 215 56.3
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 7.3e-60 234.6 146 77.4
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 4.6e-54 215.3 197 57.4
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.6e-51 206.8 145 72.4
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 5.2e-50 201.8 150 69.3
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 1.1e-47 194.1 158 60.8
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 5.4e-47 191.8 139 71.2
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.7e-46 189.5 197 47.7
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.0e-45 186.0 174 51.1
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-44 184.1 141 63.1
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.1e-42 177.6 169 52.1
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.4e-42 177.2 124 71.8
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.4e-39 167.2 145 62.8
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 4.2e-39 165.6 143 58.0
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.6e-38 163.7 125 65.6
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 3.9e-37 159.1 203 40.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 4.0e-34 149.1 178 43.3
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 6.9e-34 148.3 148 45.9
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 2.6e-33 146.4 106 66.0
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 7.6e-33 144.8 205 38.0
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.2e-30 137.5 216 42.1
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 2.7e-30 136.3 155 43.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.4e-26 124.0 185 38.9
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.4e-23 114.0 75 70.7
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 9.3e-23 111.3 77 68.8
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-22 110.9 91 65.9
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 3.7e-19 99.4 142 38.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 6.2e-19 98.6 73 68.5
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.0e-16 91.3 50 80.0
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.9e-16 89.7 78 60.3
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.4e-15 87.4 49 77.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.6e-14 84.0 69 56.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 4.6e-14 82.4 48 75.0
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.1e-12 77.8 57 61.4
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.9e-12 77.0 49 73.5
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 3.3e-12 76.3 87 54.0
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.0e-09 67.0 40 72.5
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.3e-08 64.3 55 60.0
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 2.5e-07 60.1 67 43.3
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 7.2e-07 58.5 76 38.2
TAR633G2340 Trochodendron aralioides HOM05D000428 ORTHO05D000582 7.2e-07 58.5 75 38.7
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 9.3e-07 58.2 44 63.6
Gohir.A03G191900 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.6e-06 57.4 70 35.7
Gohir.D02G212800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.6e-06 57.4 70 35.7
Gorai.005G240800 Gossypium raimondii HOM05D000561 ORTHO05D000514 1.6e-06 57.4 70 35.7
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 1.6e-06 57.4 48 58.3
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 2.1e-06 57.0 33 78.8
MD10G1090700 Malus domestica HOM05D000561 ORTHO05D000514 3.6e-06 56.2 67 34.3
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 4.6e-06 55.8 56 44.6
MD05G1076000 Malus domestica HOM05D000561 ORTHO05D000514 4.6e-06 55.8 69 37.7
FvH4_6g17300 Fragaria vesca HOM05D000428 ORTHO05D000582 6.1e-06 55.5 128 32.0
FAN02G1116 Fragaria x ananassa HOM05D000428 ORTHO05D000582 6.1e-06 55.5 128 32.0
FAN14G0770 Fragaria x ananassa HOM05D000428 ORTHO05D000582 6.1e-06 55.5 128 32.0
FAN05G0652 Fragaria x ananassa HOM05D000428 ORTHO05D000582 7.9e-06 55.1 128 32.0
FAN05G3216 Fragaria x ananassa HOM05D000428 ORTHO05D000582 7.9e-06 55.1 128 32.0
Manes.09G054400 Manihot esculenta HOM05D001873 ORTHO05D001976 7.9e-06 55.1 65 36.9


User provided reference genes

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