Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 8.3e-266 919.8 475 100.0
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.9e-225 785.8 475 83.8
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 9.6e-222 773.5 474 84.4
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.5e-206 723.0 476 78.4
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.5e-203 713.0 475 78.7
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 4.9e-202 708.0 475 78.5
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.7e-200 702.2 491 75.6
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-199 699.9 475 77.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 8.7e-199 697.2 475 78.3
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 6.9e-196 687.6 475 75.8
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 9.0e-196 687.2 477 76.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.4e-195 685.3 479 75.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.5e-193 679.1 476 74.8
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.6e-192 676.4 476 74.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 6.1e-192 674.5 475 75.2
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 6.1e-192 674.5 475 75.2
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 7.9e-192 674.1 490 74.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-191 673.3 480 72.5
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 3.0e-191 672.2 489 74.2
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.9e-191 671.8 489 74.4
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.1e-190 670.2 476 74.6
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.3e-189 664.5 476 74.2
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.4e-188 663.3 476 73.9
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.4e-188 663.3 477 72.3
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-188 662.5 475 72.6
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.4e-188 662.5 475 73.5
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.1e-188 660.6 482 72.6
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.5e-187 659.8 477 73.2
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.0e-187 659.4 452 76.3
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.7e-186 656.4 475 72.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-186 655.6 464 72.8
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.9e-185 652.9 475 73.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.2e-185 652.1 475 73.1
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.2e-185 652.1 475 71.8
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 4.2e-185 651.7 475 73.1
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 7.2e-185 651.0 508 69.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 9.4e-185 650.6 475 72.4
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 9.4e-185 650.6 499 68.5
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 2.7e-184 649.0 475 72.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.6e-184 648.3 475 72.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.6e-184 648.3 515 68.9
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 6.1e-184 647.9 481 70.7
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 7.9e-184 647.5 492 69.9
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.4e-183 646.7 476 71.6
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.3e-183 646.0 496 70.6
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.3e-183 646.0 476 70.0
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.5e-182 643.3 475 71.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.6e-182 642.5 476 69.7
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.6e-182 642.5 476 71.2
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.7e-181 639.8 487 70.2
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.2e-181 639.4 475 72.2
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 6.9e-180 634.4 475 70.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 9.1e-180 634.0 475 71.2
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.5e-179 633.3 508 68.1
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.4e-179 632.1 412 78.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 3.4e-179 632.1 529 65.8
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 5.9e-179 631.3 478 70.3
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-178 630.6 475 69.5
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.0e-178 630.6 477 69.6
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.5e-178 627.9 460 70.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 8.5e-178 627.5 476 69.5
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.1e-177 627.1 393 81.2
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.9e-177 626.3 483 70.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 5.5e-177 624.8 476 68.5
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-176 623.6 475 68.6
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.6e-176 623.2 472 70.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.7e-176 622.5 476 68.1
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 2.7e-176 622.5 475 70.3
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 3.6e-176 622.1 476 68.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.6e-176 622.1 476 68.5
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.8e-175 619.8 475 67.6
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.3e-175 619.4 478 68.0
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.9e-175 618.6 475 67.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.0e-174 616.3 474 70.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.6e-174 615.9 488 66.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.7e-174 614.8 464 70.0
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 7.4e-174 614.4 476 67.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 7.4e-174 614.4 533 64.0
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 9.7e-174 614.0 476 67.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.3e-173 613.6 479 67.6
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.7e-173 613.2 453 71.7
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.2e-173 612.8 475 68.0
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.7e-173 612.1 473 68.1
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.7e-173 612.1 473 68.1
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.8e-172 609.8 481 69.6
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.1e-172 609.0 475 67.8
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.3e-172 608.2 378 79.4
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.6e-171 605.9 482 68.7
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.5e-171 605.5 486 68.7
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 4.5e-171 605.1 476 68.1
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-170 602.4 475 67.4
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 5.0e-170 601.7 434 73.0
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.2e-169 599.0 475 66.9
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.2e-168 597.0 475 68.8
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.0e-167 594.0 475 67.4
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 2.3e-167 592.8 371 80.1
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.0e-167 592.4 477 67.9
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 4.0e-167 592.0 476 64.9
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 3.7e-165 585.5 475 67.2
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.7e-165 585.5 488 64.1
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 6.3e-165 584.7 420 72.9
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 8.2e-165 584.3 481 66.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.4e-164 583.6 526 63.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.1e-164 582.4 471 65.6
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 5.3e-164 581.6 483 65.0
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.5e-162 574.7 484 63.4
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.1e-161 573.9 476 65.5
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.1e-161 573.9 506 62.1
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.9e-161 573.2 469 66.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.1e-160 569.7 483 64.6
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-159 567.4 492 62.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.4e-159 567.0 407 74.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 3.4e-158 562.4 477 64.8
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 4.4e-158 562.0 332 82.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.7e-157 560.1 478 65.1
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.8e-157 559.3 487 63.7
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.0e-155 553.1 482 62.4
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 8.5e-154 547.7 500 61.4
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 6.1e-152 541.6 444 65.3
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 7.5e-150 534.6 443 64.1
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.7e-149 533.5 476 63.7
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.0e-147 526.6 476 62.8
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 2.3e-146 523.1 519 59.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.5e-145 520.4 468 58.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 5.2e-143 511.9 501 58.5
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 9.8e-142 507.7 285 86.3
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 2.9e-141 506.1 279 86.7
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 3.5e-139 499.2 460 59.1
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-137 493.8 471 59.2
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.5e-137 493.8 331 72.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.4e-134 482.3 575 53.4
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-133 479.9 386 66.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.2e-133 479.9 424 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.1e-132 477.6 330 70.6
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 5.4e-132 475.3 334 71.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.3e-125 451.4 452 58.6
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.4e-124 450.7 478 57.3
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.6e-122 441.4 354 65.5
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.9e-121 440.3 409 56.5
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.4e-117 424.9 445 56.6
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.3e-104 384.4 387 56.1
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.6e-102 376.7 287 68.6
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 5.8e-102 375.6 355 54.9
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.1e-100 371.3 339 56.0
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.2e-76 290.0 475 41.5
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 4.6e-75 286.2 260 56.5
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.1e-74 282.7 472 43.2
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.4e-55 221.5 382 37.7
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.0e-46 191.0 400 37.5
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 2.2e-45 187.6 257 47.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.3e-37 161.8 120 69.2
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-34 151.4 200 50.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.1e-31 140.6 134 56.7
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.9e-28 131.3 96 69.8
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.2e-24 117.9 203 43.3
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 3.2e-23 114.0 108 56.5
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 5.4e-23 113.2 118 54.2
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 4.3e-20 103.6 215 39.5
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 9.5e-12 75.9 193 39.9
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 9.9e-09 65.9 208 24.5
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.7e-08 65.1 208 26.9


User provided reference genes

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