Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.2e-81 304.7 159 100.0
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 4.4e-70 268.1 159 86.8
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.0e-67 259.2 157 86.6
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.5e-65 253.1 161 81.4
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 7.2e-65 250.8 157 83.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.6e-64 249.6 157 84.1
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.7e-64 248.8 157 83.4
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 8.0e-64 247.3 158 82.3
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.8e-63 246.1 159 81.1
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.4e-62 241.9 157 80.9
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.4e-62 241.9 157 80.9
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 7.5e-62 240.7 157 81.5
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.8e-61 238.8 157 80.3
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-59 233.0 157 78.3
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 5.9e-59 231.1 157 77.1
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.0e-58 230.3 157 76.4
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.0e-58 230.3 157 77.1
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.3e-58 229.9 156 77.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.7e-58 229.6 157 76.4
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 5.0e-58 228.0 157 75.8
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.5e-57 225.7 156 76.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.2e-57 224.9 157 73.9
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 5.5e-57 224.6 157 74.5
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 4.7e-56 221.5 157 75.2
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 6.1e-56 221.1 154 76.0
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-55 220.3 155 77.4
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.0e-55 220.3 157 73.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.4e-55 219.9 157 73.2
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.4e-55 219.9 155 73.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.8e-55 219.5 157 73.9
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.3e-55 219.2 157 72.6
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.0e-55 218.8 157 72.6
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 6.8e-55 217.6 161 76.4
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.2e-54 216.9 157 73.2
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.0e-54 216.1 157 73.2
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.6e-54 215.7 161 75.8
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.6e-54 215.7 155 76.8
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.4e-54 215.3 159 76.1
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 4.4e-54 214.9 155 71.6
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 4.4e-54 214.9 156 74.4
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 4.4e-54 214.9 158 73.4
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 5.7e-54 214.5 157 73.2
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 7.5e-54 214.2 157 74.5
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 7.5e-54 214.2 158 73.4
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.3e-53 213.4 156 73.1
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.7e-53 213.0 158 73.4
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.7e-53 213.0 159 69.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.7e-53 213.0 155 75.5
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.2e-53 212.6 155 71.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.9e-53 212.2 157 70.7
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 3.7e-53 211.8 157 70.1
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 8.3e-53 210.7 159 69.8
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.3e-53 210.7 155 72.9
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-52 210.3 159 71.7
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-52 209.5 153 71.9
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.8e-52 209.5 156 70.5
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.8e-52 209.5 156 74.4
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.4e-52 209.1 147 74.1
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.2e-52 208.8 155 72.3
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 4.1e-52 208.4 155 72.9
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.1e-52 208.4 157 73.9
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.0e-52 207.6 157 71.3
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 9.2e-52 207.2 153 71.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-51 206.8 157 72.6
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.6e-51 206.5 159 70.4
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.0e-51 206.1 158 70.9
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-51 206.1 157 72.0
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.0e-51 206.1 157 72.0
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.7e-51 205.7 159 70.4
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.5e-51 205.3 159 70.4
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 5.9e-51 204.5 143 75.5
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 5.9e-51 204.5 163 71.2
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.8e-51 204.1 155 76.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 7.8e-51 204.1 156 69.9
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.8e-51 204.1 154 74.0
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.9e-50 202.2 155 69.0
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.9e-50 201.8 172 68.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 3.9e-50 201.8 157 69.4
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 6.6e-50 201.1 153 70.6
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.1e-49 200.3 156 68.6
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.5e-49 199.9 159 67.3
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.5e-49 199.9 159 69.2
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 4.0e-47 191.8 202 57.4
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.2e-47 191.4 155 68.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 6.8e-47 191.0 183 60.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 8.9e-47 190.7 140 72.1
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.9e-47 190.7 155 65.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.5e-46 187.6 145 69.0
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.5e-46 187.6 145 69.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.3e-45 186.8 222 51.8
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.2e-45 186.0 129 76.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.9e-45 185.7 155 68.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 4.9e-45 184.9 155 64.5
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.1e-44 183.7 155 66.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.1e-44 181.8 158 64.6
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.0e-44 181.0 155 63.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.2e-43 180.3 123 78.9
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.7e-43 179.1 155 63.9
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-42 176.8 155 63.2
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.3e-42 176.8 155 63.2
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.3e-42 176.8 155 63.2
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.3e-42 176.0 153 61.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 3.9e-42 175.3 153 60.1
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.9e-42 175.3 155 62.6
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.9e-42 175.3 160 62.5
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.9e-42 175.3 132 75.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 6.6e-42 174.5 155 68.4
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.1e-41 173.7 153 59.5
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.1e-41 173.7 155 65.8
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 4.3e-41 171.8 112 77.7
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 4.3e-41 171.8 125 73.6
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.6e-41 171.4 153 62.1
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 5.6e-41 171.4 153 62.1
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.6e-41 171.4 153 62.1
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 5.6e-41 171.4 124 75.8
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 9.5e-41 170.6 154 61.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 9.5e-41 170.6 155 62.6
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 9.5e-41 170.6 153 60.8
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.2e-40 167.9 155 65.8
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 6.2e-40 167.9 141 64.5
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 8.1e-40 167.5 141 65.2
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 8.1e-40 167.5 160 63.8
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.1e-39 167.2 155 66.5
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.1e-39 167.2 155 66.5
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.2e-39 164.9 159 59.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 6.8e-39 164.5 177 55.4
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.8e-39 164.5 158 62.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.6e-38 162.5 127 68.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.6e-38 162.5 184 52.7
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.6e-38 162.5 156 57.1
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 9.8e-38 160.6 155 63.9
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-37 159.8 158 58.9
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.4e-37 157.9 119 72.3
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.1e-36 157.1 155 58.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 7.1e-36 154.5 155 62.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.1e-35 152.9 154 58.4
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.1e-35 152.9 269 40.5
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.7e-35 152.5 96 80.2
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.5e-35 152.1 166 54.8
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 7.8e-35 151.0 158 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.9e-34 148.7 144 59.7
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.9e-33 146.4 156 56.4
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.5e-33 146.0 150 58.7
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.5e-33 146.0 114 71.1
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.3e-33 145.6 157 55.4
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 7.3e-33 144.4 102 73.5
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.5e-33 144.1 93 78.5
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-32 143.7 155 53.5
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.6e-32 143.3 175 50.9
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.6e-32 142.1 94 77.7
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.6e-32 142.1 97 76.3
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.8e-31 139.8 138 59.4
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.2e-31 138.3 92 77.2
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.2e-31 138.3 93 77.4
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 8.9e-31 137.5 172 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.0e-30 136.3 143 57.3
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.4e-30 135.6 116 63.8
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.7e-29 133.3 177 48.6
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.7e-29 133.3 93 72.0
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.2e-28 129.0 94 73.4
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.7e-26 123.2 157 51.0
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 5.1e-26 121.7 90 72.2
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.1e-23 112.5 157 46.5
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.1e-19 99.8 77 62.3
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.5e-19 99.0 89 65.2
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.6e-18 94.7 90 62.2
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.7e-18 94.4 90 62.2
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.5e-17 92.8 89 58.4
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 7.3e-17 91.3 86 60.5
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 8.1e-16 87.8 83 51.8
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.2e-14 84.0 61 67.2
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.2e-11 73.9 66 57.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.0e-10 70.9 94 51.1
ATR0347G001 Amborella trichopoda HOM05D004104 ORTHO05D004755 1.6e-08 63.5 65 56.9
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 4.0e-07 58.9 88 44.3
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 9.0e-07 57.8 84 41.7
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.0e-06 56.6 79 43.0
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.6e-06 56.2 44 61.4


User provided reference genes

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