Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 8.5e-268 926.4 459 100.0
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.8e-245 850.1 459 91.9
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 7.1e-230 800.4 477 85.3
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 5.6e-227 790.8 455 86.6
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.2e-226 789.6 458 85.4
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.1e-226 788.9 458 85.8
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.0e-224 782.3 457 84.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 5.8e-224 780.8 455 85.1
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-223 778.5 455 85.1
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.9e-223 778.5 458 84.1
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.9e-223 777.7 455 84.8
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.9e-222 775.8 455 85.3
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-222 775.8 455 85.3
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 5.4e-222 774.2 458 84.3
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.4e-222 774.2 455 85.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 5.4e-222 774.2 459 84.3
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.2e-221 773.1 466 83.9
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.6e-221 772.7 458 83.6
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.1e-221 772.3 455 84.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.0e-220 770.0 465 81.9
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.3e-220 769.6 459 83.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 3.0e-220 768.5 458 83.2
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.0e-220 768.5 466 83.5
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 3.9e-220 768.1 463 83.2
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.7e-220 766.9 466 83.3
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 8.7e-220 766.9 465 83.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.9e-219 765.8 458 83.2
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 9.6e-219 763.5 457 82.9
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.3e-218 763.1 457 82.7
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 9.9e-216 753.4 487 79.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 3.8e-215 751.5 458 81.2
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 3.2e-214 748.4 458 80.8
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.2e-213 746.5 452 81.9
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.6e-213 746.1 440 84.1
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 4.6e-213 744.6 455 80.9
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.9e-212 741.5 466 79.8
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 5.1e-212 741.1 458 79.5
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 8.7e-212 740.3 459 80.8
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.5e-211 738.8 456 80.9
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.3e-210 736.5 463 80.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.6e-210 736.1 460 80.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.8e-210 735.3 463 80.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 4.8e-210 734.6 462 78.8
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.4e-209 733.0 454 81.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.1e-209 731.9 476 79.0
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.0e-209 731.5 462 79.7
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 6.9e-209 730.7 439 82.7
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 9.0e-209 730.3 479 77.7
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.5e-208 729.6 453 80.4
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 4.5e-208 728.0 464 78.9
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.3e-207 726.5 458 79.7
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.7e-207 726.1 465 80.2
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.8e-207 724.9 461 79.8
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 6.4e-207 724.2 464 78.7
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 8.4e-207 723.8 462 79.4
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.4e-206 723.0 464 79.7
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.9e-206 722.6 465 78.5
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.4e-206 722.2 465 80.0
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 5.5e-206 721.1 455 78.5
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 7.1e-206 720.7 455 78.5
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.2e-205 719.9 462 78.1
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-205 719.5 455 80.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.7e-205 718.8 457 78.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 6.0e-205 717.6 463 78.8
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 6.7e-204 714.1 467 79.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 6.7e-204 714.1 465 78.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.3e-202 709.9 495 73.9
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.6e-202 709.5 455 78.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.6e-202 709.5 458 78.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.1e-202 709.1 465 77.6
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.8e-202 708.8 458 78.2
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 3.7e-202 708.4 458 77.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-201 706.8 447 77.9
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.8e-201 706.1 492 74.2
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 4.0e-201 704.9 458 78.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 4.0e-201 704.9 458 78.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.0e-201 704.9 458 78.2
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 5.3e-201 704.5 465 76.8
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.5e-200 703.0 453 77.3
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.6e-200 702.2 477 76.5
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.0e-199 700.3 455 78.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.7e-199 699.5 452 76.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 5.5e-198 694.5 472 76.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 9.3e-198 693.7 463 76.5
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 4.3e-195 684.9 457 79.2
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.1e-193 678.7 455 75.2
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.6e-192 675.6 384 87.5
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.4e-192 675.2 432 78.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 5.9e-192 674.5 458 75.1
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 9.7e-187 657.1 449 74.2
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 4.8e-186 654.8 457 74.4
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.0e-183 647.1 465 72.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.5e-176 623.2 464 70.5
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.0e-176 622.9 471 68.8
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-176 622.5 368 85.6
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.9e-176 621.3 468 69.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 5.3e-169 598.2 385 79.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.0e-168 596.3 476 67.2
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.6e-165 586.6 441 69.4
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.6e-165 586.6 473 65.8
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.7e-163 578.2 437 68.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.0e-161 571.2 440 67.0
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.8e-159 565.5 445 64.7
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.2e-158 561.2 437 67.3
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.4e-156 557.0 333 83.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.0e-156 555.8 392 72.2
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 4.8e-154 548.5 335 83.9
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.1e-153 547.4 468 60.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 8.8e-148 527.7 430 64.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 4.9e-146 521.9 430 62.6
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.0e-144 516.5 318 84.6
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 6.6e-143 511.5 318 84.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 9.5e-142 507.7 452 59.7
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.6e-141 505.8 289 83.0
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 6.1e-141 505.0 311 83.0
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-139 500.7 356 74.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.9e-138 496.1 337 77.7
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.4e-137 493.8 318 79.9
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.2e-136 490.7 488 55.1
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.3e-132 476.5 446 57.4
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.9e-130 469.5 447 55.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.0e-128 463.4 423 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.7e-122 443.7 461 53.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.2e-113 412.9 361 65.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.9e-108 395.2 395 51.9
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.8e-104 381.7 416 54.1
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.1e-94 351.3 275 69.5
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.2e-82 310.5 217 71.4
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.0e-80 302.4 272 61.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.7e-79 298.9 155 87.1
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.3e-76 289.3 229 63.3
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.7e-74 284.3 196 67.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.4e-73 281.2 244 63.1
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 6.3e-69 265.8 397 40.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 6.9e-68 262.3 212 69.8
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.8e-66 256.5 141 83.0
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 3.0e-63 246.9 141 78.7
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.8e-61 240.4 309 43.0
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.5e-59 234.6 138 80.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.0e-54 217.6 328 41.2
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 5.9e-43 179.5 162 56.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.7e-37 160.2 120 63.3
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-36 158.3 104 71.2
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.8e-32 144.1 117 70.1
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.8e-26 123.6 393 28.5
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-24 118.6 68 80.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.4e-20 103.2 441 25.4
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.0e-19 99.8 151 45.7
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.6e-16 91.7 65 72.3
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 3.4e-14 84.0 72 62.5
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 8.3e-13 79.3 91 52.7
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.0e-10 70.9 74 47.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.5e-09 68.6 45 73.3
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 7.3e-09 66.2 38 81.6
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 6.2e-08 63.2 111 41.4
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.5e-06 58.5 33 81.8


User provided reference genes

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