Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.2e-175 619.8 317 100.0
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.7e-36 157.5 297 33.3
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 9.1e-35 151.8 295 32.2
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.2e-34 151.4 321 31.8
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.0e-33 148.3 306 31.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.2e-33 147.1 297 32.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.2e-33 147.1 299 32.4
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.8e-33 146.4 297 31.3
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 3.8e-33 146.4 299 31.4
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.0e-33 146.0 297 31.0
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 5.0e-33 146.0 297 32.0
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 5.0e-33 146.0 316 30.4
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 6.5e-33 145.6 297 32.0
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 6.5e-33 145.6 297 31.0
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 6.5e-33 145.6 297 31.0
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 6.5e-33 145.6 298 32.2
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 8.5e-33 145.2 316 31.6
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 8.5e-33 145.2 367 30.8
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 8.5e-33 145.2 298 32.2
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 1.1e-32 144.8 297 31.0
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.5e-32 144.4 297 31.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.5e-32 144.4 297 32.0
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.9e-32 144.1 302 31.1
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.9e-32 144.1 297 31.6
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.9e-32 144.1 291 32.0
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.9e-32 144.1 297 30.6
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.9e-32 144.1 297 31.6
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.5e-32 143.7 302 31.8
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 3.2e-32 143.3 298 30.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 4.2e-32 142.9 302 31.5
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 4.2e-32 142.9 304 31.9
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 5.5e-32 142.5 301 31.2
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 5.5e-32 142.5 292 32.9
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 7.2e-32 142.1 316 30.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 7.2e-32 142.1 297 30.6
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 7.2e-32 142.1 302 30.8
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 7.2e-32 142.1 298 32.2
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.2e-32 142.1 301 31.9
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.2e-32 142.1 297 30.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 9.4e-32 141.7 301 31.2
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 9.4e-32 141.7 291 30.6
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 9.4e-32 141.7 297 31.3
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 9.4e-32 141.7 298 31.5
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 9.4e-32 141.7 302 31.5
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 9.4e-32 141.7 297 31.3
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.2e-31 141.4 298 30.9
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.2e-31 141.4 318 28.9
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.2e-31 141.4 302 30.5
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-31 141.4 297 32.0
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.2e-31 141.4 297 31.3
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.6e-31 141.0 303 30.4
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.6e-31 141.0 299 30.4
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.6e-31 141.0 297 32.0
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 1.6e-31 141.0 297 32.0
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.1e-31 140.6 304 29.6
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 2.7e-31 140.2 323 31.0
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 2.7e-31 140.2 303 29.4
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.7e-31 140.2 297 31.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 2.7e-31 140.2 298 30.2
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 2.7e-31 140.2 301 31.6
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.6e-31 139.8 297 30.6
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.6e-31 139.8 297 31.0
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.6e-31 139.8 297 30.6
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.6e-31 139.8 297 32.3
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.6e-31 139.8 331 31.1
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 3.6e-31 139.8 301 31.6
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 4.7e-31 139.4 294 30.6
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 4.7e-31 139.4 294 30.6
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 4.7e-31 139.4 294 30.6
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 4.7e-31 139.4 297 30.6
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 4.7e-31 139.4 297 30.6
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 6.1e-31 139.0 303 30.4
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 6.1e-31 139.0 297 31.3
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 6.1e-31 139.0 297 30.3
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 6.1e-31 139.0 303 30.0
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.0e-31 138.7 302 30.8
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.0e-31 138.7 297 30.3
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.0e-31 138.7 296 31.4
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.0e-31 138.7 296 31.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.0e-30 138.3 293 30.4
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.0e-30 138.3 303 30.4
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.0e-30 138.3 297 30.3
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.0e-30 138.3 297 30.6
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.0e-30 138.3 297 30.3
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.0e-30 138.3 295 31.2
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.0e-30 138.3 302 31.1
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 1.4e-30 137.9 301 30.9
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.8e-30 137.5 297 30.6
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.8e-30 137.5 293 30.4
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.8e-30 137.5 306 30.4
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.8e-30 137.5 293 30.4
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.8e-30 137.5 292 30.1
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.8e-30 137.5 297 31.3
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 2.3e-30 137.1 299 30.8
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 2.3e-30 137.1 315 30.2
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.3e-30 137.1 297 31.6
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.3e-30 137.1 302 30.8
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.0e-30 136.7 296 29.4
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 3.0e-30 136.7 297 29.3
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.0e-30 136.7 319 30.1
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 4.0e-30 136.3 290 31.0
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 4.0e-30 136.3 297 30.3
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 4.0e-30 136.3 297 29.3
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 5.2e-30 136.0 294 30.3
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 5.2e-30 136.0 293 30.4
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 5.2e-30 136.0 303 29.4
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.2e-30 136.0 302 30.5
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 5.2e-30 136.0 316 30.1
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 5.2e-30 136.0 315 30.8
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 6.8e-30 135.6 301 31.6
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 6.8e-30 135.6 301 29.6
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 8.8e-30 135.2 303 29.0
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 8.8e-30 135.2 302 30.5
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.2e-29 134.8 299 30.8
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.2e-29 134.8 299 31.1
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.5e-29 134.4 294 29.9
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.5e-29 134.4 294 29.9
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.5e-29 134.4 294 29.9
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.5e-29 134.4 294 29.9
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.5e-29 134.4 294 29.9
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 1.5e-29 134.4 297 30.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.5e-29 134.4 295 30.8
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.0e-29 134.0 297 30.3
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 2.6e-29 133.7 299 32.4
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 2.6e-29 133.7 297 29.3
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.6e-29 133.7 306 31.4
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 3.4e-29 133.3 296 30.7
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 5.7e-29 132.5 290 30.3
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 5.7e-29 132.5 306 30.7
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 5.7e-29 132.5 302 28.8
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 7.5e-29 132.1 297 30.0
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.3e-28 131.3 298 30.2
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.3e-28 131.3 323 28.8
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.7e-28 131.0 290 30.0
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.7e-28 131.0 301 30.6
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 1.7e-28 131.0 290 29.3
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 2.2e-28 130.6 297 31.3
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.8e-28 130.2 319 29.2
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.7e-28 129.8 289 30.4
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 3.7e-28 129.8 301 30.2
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 8.3e-28 128.6 299 29.8
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.8e-27 127.5 287 29.3
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.8e-27 127.5 307 30.0
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.8e-27 127.5 295 29.8
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 2.4e-27 127.1 297 30.3
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 4.1e-27 126.3 297 30.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 5.4e-27 125.9 301 30.2
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.0e-27 125.6 289 29.4
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.2e-26 124.8 290 28.3
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.7e-26 123.6 297 29.0
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 7.7e-26 122.1 290 29.3
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 1.7e-25 120.9 295 29.5
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 3.8e-25 119.8 275 28.7
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.1e-24 118.2 293 29.4
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.9e-24 117.5 271 31.4
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 2.5e-24 117.1 306 28.1
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 6.1e-23 112.5 297 28.6
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.0e-22 111.7 297 28.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.4e-22 111.3 331 27.2
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.8e-22 110.9 318 26.7
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.3e-22 110.5 342 26.6
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 6.8e-22 109.0 299 27.8
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 2.0e-21 107.5 291 27.8
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 2.8e-20 103.6 204 32.8
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 4.9e-20 102.8 232 28.9
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 3.5e-18 96.7 224 27.7
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 8.6e-17 92.0 192 29.2
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 1.1e-16 91.7 178 28.7
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.3e-16 90.1 188 28.7
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.3e-16 90.1 183 27.9
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 4.3e-16 89.7 182 30.2
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 7.3e-16 89.0 180 31.7
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.0e-14 85.1 183 29.0
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 3.4e-13 80.1 255 27.8
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 2.3e-09 67.4 245 26.1
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 8.9e-06 55.5 114 28.9


User provided reference genes

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