Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 1.2e-307 1058.9 515 100.0
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 1.4e-88 331.3 489 38.4
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 6.8e-88 328.9 443 39.7
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 6.3e-86 322.4 494 39.5
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 4.1e-85 319.7 463 39.7
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 5.4e-85 319.3 492 38.4
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 7.0e-85 318.9 472 38.6
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 7.0e-85 318.9 475 38.5
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 3.5e-84 316.6 441 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 1.5e-82 311.2 489 38.4
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 3.3e-82 310.1 450 40.2
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 5.5e-82 309.3 451 40.4
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 9.5e-82 308.5 460 40.0
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 6.1e-81 305.8 492 37.2
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 6.1e-81 305.8 492 37.2
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.0e-80 305.1 479 38.0
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 1.8e-80 304.3 482 38.0
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 2.3e-80 303.9 464 38.1
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 3.0e-80 303.5 463 38.0
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 4.0e-80 303.1 463 38.0
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 4.0e-80 303.1 475 38.5
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 6.8e-80 302.4 427 40.0
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 6.8e-80 302.4 423 39.7
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 8.9e-80 302.0 475 37.7
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 8.9e-80 302.0 463 37.8
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 8.9e-80 302.0 463 37.8
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 1.2e-79 301.6 464 38.1
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 1.5e-79 301.2 427 39.8
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 1.5e-79 301.2 429 39.2
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 2.6e-79 300.4 469 37.3
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 2.6e-79 300.4 475 38.1
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 3.4e-79 300.1 467 39.0
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 3.4e-79 300.1 460 39.1
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 4.4e-79 299.7 448 38.4
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 4.4e-79 299.7 427 39.1
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 5.7e-79 299.3 427 39.6
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 7.5e-79 298.9 429 39.2
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 7.5e-79 298.9 429 39.2
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 7.5e-79 298.9 431 40.1
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 9.8e-79 298.5 431 39.0
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 9.8e-79 298.5 431 39.2
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 9.8e-79 298.5 431 39.0
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 9.8e-79 298.5 431 39.2
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 9.8e-79 298.5 431 39.2
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 9.8e-79 298.5 431 39.0
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 9.8e-79 298.5 476 38.0
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 1.3e-78 298.1 492 38.0
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 1.7e-78 297.7 465 37.0
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 1.7e-78 297.7 431 39.0
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 1.7e-78 297.7 431 39.0
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 2.2e-78 297.4 464 38.1
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 2.8e-78 297.0 435 37.5
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 2.8e-78 297.0 464 36.9
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 3.7e-78 296.6 471 37.8
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 4.9e-78 296.2 458 36.9
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 4.9e-78 296.2 475 37.1
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 4.9e-78 296.2 427 38.4
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 4.9e-78 296.2 473 36.8
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 6.3e-78 295.8 452 38.7
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 6.3e-78 295.8 431 39.0
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 6.3e-78 295.8 475 37.7
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 6.3e-78 295.8 462 36.8
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 6.3e-78 295.8 476 37.4
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 8.3e-78 295.4 500 36.4
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 8.3e-78 295.4 465 38.7
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 1.1e-77 295.0 463 37.4
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.4e-77 294.7 469 35.4
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 1.4e-77 294.7 439 40.1
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 1.4e-77 294.7 465 37.4
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 1.8e-77 294.3 467 36.4
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 2.4e-77 293.9 463 38.2
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 2.4e-77 293.9 471 36.9
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 3.2e-77 293.5 479 38.0
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 3.2e-77 293.5 465 37.6
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 3.2e-77 293.5 463 36.9
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 7.0e-77 292.4 463 35.4
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 7.0e-77 292.4 476 37.2
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 1.6e-76 291.2 439 37.8
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 1.6e-76 291.2 465 37.4
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 4.5e-76 289.7 477 36.3
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 4.5e-76 289.7 463 36.1
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 7.8e-76 288.9 481 38.0
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 1.3e-75 288.1 425 39.1
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 1.3e-75 288.1 467 38.1
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 1.7e-75 287.7 462 36.1
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 2.9e-75 287.0 509 36.0
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 3.9e-75 286.6 463 36.3
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 3.9e-75 286.6 427 38.4
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 5.0e-75 286.2 469 35.0
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 6.6e-75 285.8 436 37.6
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 1.1e-74 285.0 466 35.6
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 1.5e-74 284.6 463 35.2
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 1.9e-74 284.3 466 36.3
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 2.5e-74 283.9 427 37.2
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 4.3e-74 283.1 479 38.0
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.1e-73 280.8 422 36.5
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 2.8e-73 280.4 503 37.6
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 1.2e-71 275.0 463 37.4
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 1.5e-71 274.6 446 36.5
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 1.5e-71 274.6 427 35.8
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 7.5e-71 272.3 460 36.3
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 9.8e-71 271.9 446 36.5
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 8.3e-70 268.9 474 35.4
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 4.3e-66 256.5 467 34.3
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 2.2e-62 244.2 393 36.4
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 3.7e-62 243.4 424 35.6
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 9.2e-61 238.8 441 35.1
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 9.2e-61 238.8 420 35.0
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 7.8e-60 235.7 352 39.5
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 6.6e-59 232.6 405 34.6
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 9.5e-58 228.8 323 39.0
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 5.2e-56 223.0 515 29.1
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 4.8e-41 173.3 260 39.2
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.8e-38 163.7 449 28.3
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 1.7e-35 154.8 234 35.0
HPP92_014748 Vanilla planifolia HOM05D005670 ORTHO05D007612 2.4e-32 144.4 216 37.5
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 5.8e-31 139.8 220 35.9
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.7e-28 131.0 320 28.8
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 6.0e-28 129.8 429 26.6
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 6.0e-28 129.8 342 26.3
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.8e-25 120.9 278 30.6
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 4.2e-21 107.1 447 24.8
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 5.5e-21 106.7 444 26.4
Zm00001eb137210 Zea mays HOM05D005670 ORTHO05D007612 7.9e-20 102.8 129 41.9
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 2.3e-19 101.3 432 25.7
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 3.0e-19 100.9 451 24.6
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 5.1e-19 100.1 434 25.3
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 6.7e-19 99.8 433 24.9
Eucgr.E03117 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.9e-18 98.2 224 29.0
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 2.5e-18 97.8 207 30.4
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 9.6e-18 95.9 436 24.3
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.3e-17 95.5 431 24.6
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.6e-17 95.1 434 25.1
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 2.8e-17 94.4 434 24.7
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 3.7e-17 94.0 431 25.1
Actinidia25619 Actinidia chinensis HOM05D005670 ORTHO05D007612 1.1e-16 92.4 164 35.4
Actinidia39456 Actinidia chinensis HOM05D005670 ORTHO05D007612 1.1e-16 92.4 164 35.4
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.1e-16 92.4 431 24.8
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 2.4e-16 91.3 459 24.0
FvH4_5g20980 Fragaria vesca HOM05D005670 ORTHO05D007612 4.1e-16 90.5 140 35.0
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 5.3e-16 90.1 433 24.0
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 5.3e-16 90.1 436 24.3
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 5.3e-16 90.1 432 23.8
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.2e-15 89.0 301 26.6
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.5e-15 88.6 451 24.6
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 4.5e-15 87.0 428 22.9
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 4.5e-15 87.0 429 23.5
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 2.2e-14 84.7 420 24.8
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.0e-11 75.9 368 23.4
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 1.8e-11 75.1 442 24.0
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 3.9e-11 73.9 484 23.3
Zm00001eb374970 Zea mays HOM05D005670 ORTHO05D007612 3.3e-10 70.9 61 45.9
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 2.6e-07 61.2 53 52.8
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 5.9e-07 60.1 53 52.8
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 1.3e-06 58.9 239 27.6
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 6.5e-06 56.6 43 58.1


User provided reference genes

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