Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026803 Carpinus fangiana HOM05D006324 ORTHO05D007463 9.8e-173 610.1 332 100.0
Cre13.g574800 Chlamydomonas reinhardtii HOM05D006324 ORTHO05D007463 1.8e-17 94.4 151 39.1
Mapoly0022s0092 Marchantia polymorpha HOM05D006324 ORTHO05D007463 2.4e-17 94.0 151 37.1
MSTRG.17017 Avicennia marina HOM05D006324 ORTHO05D007463 3.1e-17 93.6 115 41.7
Os07g0232200 Oryza sativa ssp. japonica HOM05D006324 ORTHO05D007463 5.3e-17 92.8 116 40.5
RcHm_v2.0_Chr1g0317051 Rosa chinensis HOM05D006324 ORTHO05D007463 1.2e-16 91.7 117 40.2
Aqoxy5G04067 Aquilegia oxysepala HOM05D006324 ORTHO05D007463 2.0e-16 90.9 134 36.6
Prupe.2G017700 Prunus persica HOM05D006324 ORTHO05D007463 3.4e-16 90.1 146 33.6
Prupe.2G019000 Prunus persica HOM05D006324 ORTHO05D007463 4.5e-16 89.7 139 36.0
FvH4_7g01340 Fragaria vesca HOM05D006324 ORTHO05D007463 7.6e-16 89.0 134 38.1
A10p27710 Brassica napus HOM05D000446 ORTHO05D000321 1.3e-15 88.2 116 37.1
Dinv09327 Davidia involucrata HOM05D006324 ORTHO05D007463 1.3e-15 88.2 118 39.8
BraA10t44823Z Brassica rapa HOM05D000446 ORTHO05D000321 1.7e-15 87.8 116 37.1
CARHR203710 Cardamine hirsuta HOM05D006324 ORTHO05D007463 1.7e-15 87.8 115 37.4
Oeu049007.1 Olea europaea HOM05D006324 ORTHO05D007463 1.7e-15 87.8 140 35.7
Duzib133G0472 Durio zibethinus HOM05D006324 ORTHO05D007463 2.2e-15 87.4 129 36.4
Hma1.2p1_1328F.1_g275960 Hydrangea macrophylla HOM05D006324 ORTHO05D007463 2.2e-15 87.4 112 38.4
MD02G1307800 Malus domestica HOM05D006324 ORTHO05D007463 2.2e-15 87.4 139 36.0
Cc02_g28340 Coffea canephora HOM05D006324 ORTHO05D007463 2.9e-15 87.0 118 39.8
Thhalv10014674m.g Eutrema salsugineum HOM05D006324 ORTHO05D007463 2.9e-15 87.0 114 37.7
Thecc.09G178400 Theobroma cacao HOM05D006324 ORTHO05D007463 2.9e-15 87.0 138 36.2
Zm00001eb095000 Zea mays HOM05D006324 ORTHO05D007463 2.9e-15 87.0 134 38.8
Gorai.008G105500 Gossypium raimondii HOM05D006324 ORTHO05D007463 3.8e-15 86.7 134 36.6
Peaxi162Scf00019g00017 Petunia axillaris HOM05D006324 ORTHO05D007463 3.8e-15 86.7 116 37.9
Sp6g33690 Schrenkiella parvula HOM05D006324 ORTHO05D007463 3.8e-15 86.7 118 37.3
Sed0027296 Sechium edule HOM05D006324 ORTHO05D007463 3.8e-15 86.7 136 36.0
CiPaw.13G007100 Carya illinoinensis HOM05D006324 ORTHO05D007463 4.9e-15 86.3 118 38.1
Gohir.D12G097000 Gossypium hirsutum HOM05D006324 ORTHO05D007463 6.4e-15 85.9 134 36.6
SMO331G0043 Selaginella moellendorffii HOM05D006324 ORTHO05D007463 6.4e-15 85.9 112 41.1
AT5G09680 Arabidopsis thaliana HOM05D006324 ORTHO05D007463 8.4e-15 85.5 115 38.3
Eucgr.G03365 Eucalyptus grandis HOM05D006324 ORTHO05D007463 8.4e-15 85.5 139 35.3
Hund18591 Selenicereus undatus HOM05D006324 ORTHO05D007463 8.4e-15 85.5 157 35.7
BcaB05g21537 Brassica carinata HOM05D006324 ORTHO05D007463 1.1e-14 85.1 137 32.1
BcaB08g37153 Brassica carinata HOM05D006324 ORTHO05D007463 1.1e-14 85.1 120 35.8
CANSAT80G0022 Cannabis sativa HOM05D006324 ORTHO05D007463 1.1e-14 85.1 124 37.9
CAN.G219.51 Capsicum annuum HOM05D006324 ORTHO05D007463 1.1e-14 85.1 116 37.1
MELO3C023574.2 Cucumis melo HOM05D000009 ORTHO05D007463 1.1e-14 85.1 120 37.5
CsaV3_7G030870 Cucumis sativus L. HOM05D006324 ORTHO05D007463 1.1e-14 85.1 120 37.5
unitig_8.g3776 Utricularia gibba HOM05D006324 ORTHO05D007463 1.1e-14 85.1 124 36.3
GSVIVG01032154001 Vitis vinifera HOM05D006324 ORTHO05D007463 1.1e-14 85.1 123 38.2
BcaB08g37192 Brassica carinata HOM05D000446 ORTHO05D000321 1.4e-14 84.7 147 32.0
BcaC03g13270 Brassica carinata HOM05D006324 ORTHO05D007463 1.4e-14 84.7 115 35.7
C02p04000 Brassica napus HOM05D006324 ORTHO05D007463 1.4e-14 84.7 115 35.7
BolC9t59542H Brassica oleracea HOM05D000446 ORTHO05D000321 1.4e-14 84.7 147 32.0
CSS0038258 Camellia sinensis var. sinensis HOM05D006324 ORTHO05D007463 1.4e-14 84.7 116 37.1
FAN03G2871 Fragaria x ananassa HOM05D006324 ORTHO05D007463 1.4e-14 84.7 112 38.4
MBI02_g23139_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 1.4e-14 84.7 120 38.3
Lalb_Chr01g0000431 Lupinus albus HOM05D006324 ORTHO05D007463 1.9e-14 84.3 116 37.9
Carub.0008s1534 Capsella rubella HOM05D006324 ORTHO05D007463 2.4e-14 84.0 128 35.9
Rhsim07G0057200 Rhododendron simsii HOM05D006324 ORTHO05D007463 2.4e-14 84.0 138 34.8
TWI53G0677 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 2.4e-14 84.0 140 33.6
Ciclev10032828m.g Citrus clementina HOM05D006324 ORTHO05D007463 3.2e-14 83.6 131 35.9
Dinv43416 Davidia involucrata HOM05D006324 ORTHO05D007463 3.2e-14 83.6 144 33.3
Sopen01g034520 Solanum pennellii HOM05D006324 ORTHO05D007463 3.2e-14 83.6 116 37.9
vmacro13685 Vaccinium macrocarpon HOM05D006324 ORTHO05D007463 3.2e-14 83.6 138 35.5
AL6G20110 Arabidopsis lyrata HOM05D006324 ORTHO05D007463 4.2e-14 83.2 113 37.2
C09p67800 Brassica napus HOM05D000446 ORTHO05D000321 4.2e-14 83.2 143 32.2
Migut.O00526 Erythranthe guttata HOM05D006324 ORTHO05D007463 4.2e-14 83.2 135 35.6
QL04p008819 Quercus lobata HOM05D006324 ORTHO05D007463 4.2e-14 83.2 148 36.5
Solyc01g087550.3 Solanum lycopersicum HOM05D006324 ORTHO05D007463 4.2e-14 83.2 116 37.9
SEGI_35641 Sequoiadendron giganteum HOM05D006324 ORTHO05D007463 5.4e-14 82.8 135 35.6
BraA02t04996Z Brassica rapa HOM05D006324 ORTHO05D007463 7.1e-14 82.4 137 32.1
Lj9C636G13 Lonicera japonica HOM05D006324 ORTHO05D007463 7.1e-14 82.4 139 32.4
Lj9C638G12 Lonicera japonica HOM05D006324 ORTHO05D007463 7.1e-14 82.4 139 32.4
PGR031G0767 Punica granatum HOM05D006324 ORTHO05D007463 7.1e-14 82.4 137 35.8
Ah.10g038740 Amaranthus hybridus HOM05D006324 ORTHO05D007463 9.3e-14 82.0 119 36.1
Medtr0085s0010 Medicago truncatula HOM05D006324 ORTHO05D007463 9.3e-14 82.0 118 36.4
Potri.001G263800 Populus trichocarpa HOM05D006324 ORTHO05D007463 9.3e-14 82.0 141 34.8
Gohir.A12G094300 Gossypium hirsutum HOM05D006324 ORTHO05D007463 1.2e-13 81.6 135 36.3
TWI74G1214 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 1.2e-13 81.6 137 32.1
MSTRG.20569 Avicennia marina HOM05D006324 ORTHO05D007463 1.6e-13 81.3 110 38.2
ECA248G0404 Erigeron canadensis HOM05D000636 ORTHO05D002338 1.6e-13 81.3 113 38.9
Lj3g0003899 Lotus japonicus HOM05D006324 ORTHO05D007463 1.6e-13 81.3 146 32.2
MBI04_g17676_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 1.6e-13 81.3 114 35.1
Migut.N01783 Erythranthe guttata HOM05D006324 ORTHO05D007463 2.1e-13 80.9 137 33.6
MD07G1017800 Malus domestica HOM05D006324 ORTHO05D007463 2.1e-13 80.9 133 34.6
Phvul.004G011500 Phaseolus vulgaris HOM05D006324 ORTHO05D007463 2.1e-13 80.9 158 32.9
Aa31LG3G17390 Aethionema arabicum HOM05D006324 ORTHO05D007463 2.7e-13 80.5 145 35.9
HanXRQChr12g0357631 Helianthus annuus HOM05D006324 ORTHO05D007463 2.7e-13 80.5 144 34.0
HPP92_005467 Vanilla planifolia HOM05D006324 ORTHO05D007463 2.7e-13 80.5 137 34.3
Ca_14667_v3 Cicer arietinum L. HOM05D006324 ORTHO05D007463 3.5e-13 80.1 109 36.7
Carub.0004s0655 Capsella rubella HOM05D006324 ORTHO05D007463 4.6e-13 79.7 113 36.3
Sc16g0002910 Simmondsia chinensis HOM05D006324 ORTHO05D007463 4.6e-13 79.7 110 37.3
VMungo0464G1625 Vigna mungo HOM05D006324 ORTHO05D007463 4.6e-13 79.7 158 32.3
SalBow6G4289 Salvia bowleyana HOM05D006324 ORTHO05D007463 1.0e-12 78.6 140 33.6
Atru.chr11.2585 Acer truncatum HOM05D006324 ORTHO05D007463 1.8e-12 77.8 133 35.3
Sabra16G0162000 Salix brachista HOM05D006324 ORTHO05D007463 2.3e-12 77.4 141 35.5
Glyma.09G227600 Glycine max HOM05D006324 ORTHO05D007463 5.1e-12 76.3 151 33.1
Glyma.12G009100 Glycine max HOM05D006324 ORTHO05D007463 6.7e-12 75.9 151 32.5
FAN01G1980 Fragaria x ananassa HOM05D006324 ORTHO05D007463 8.7e-12 75.5 136 33.1
A02p00110 Brassica napus HOM05D006324 ORTHO05D007463 1.1e-11 75.1 165 27.9
Lsat_1_v5_gn_1_105261 Lactuca sativa HOM05D006324 ORTHO05D007463 1.1e-11 75.1 145 32.4
MCO04G106 Micromonas commoda HOM05D006324 ORTHO05D007463 1.9e-11 74.3 106 37.7
SHI04081 Sapria himalayana HOM05D006324 ORTHO05D007463 3.3e-11 73.6 112 34.8
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 3.7e-10 70.1 98 34.7
Aa31sc1834G10 Aethionema arabicum HOM05D006324 ORTHO05D007463 1.8e-09 67.8 98 36.7
AUR62023082 Chenopodium quinoa HOM05D006324 ORTHO05D007463 3.1e-09 67.0 92 38.0
CDE02G1674 Ceratophyllum demersum HOM05D006324 ORTHO05D007463 6.9e-09 65.9 63 47.6
Peaxi162Scf00071g01141 Petunia axillaris HOM05D006324 ORTHO05D007463 1.2e-08 65.1 114 31.6
AUR62009399 Chenopodium quinoa HOM05D006324 ORTHO05D007463 1.5e-08 64.7 92 37.0
FAN06G0074 Fragaria x ananassa HOM05D006324 ORTHO05D007463 2.0e-08 64.3 134 31.3
AagrBONN_evm.TU.Sc2ySwM_344.4124 Anthoceros agrestis HOM05D006324 ORTHO05D007463 2.6e-08 63.9 127 29.9
Haze_03172 Corylus avellana HOM05D006324 ORTHO05D007463 7.6e-08 62.4 174 30.5
ATR0618G422 Amborella trichopoda HOM05D006324 ORTHO05D007463 9.9e-08 62.0 131 32.1
arahy.Tifrunner.gnm1.ann1.N2H6V0 Arachis hypogaea HOM05D006324 ORTHO05D007463 2.2e-07 60.8 113 31.9
arahy.Tifrunner.gnm1.ann1.Q955DD Arachis hypogaea HOM05D006324 ORTHO05D007463 2.2e-07 60.8 113 31.9
Pp3c20_23480 Physcomitrium patens HOM05D006324 ORTHO05D007463 3.8e-07 60.1 100 34.0
Nn7g36262 Nelumbo nucifera HOM05D006324 ORTHO05D007463 1.4e-06 58.2 94 37.2
CiPaw.14G001800 Carya illinoinensis HOM05D006324 ORTHO05D007463 3.2e-06 57.0 79 39.2
TAR633G2637 Trochodendron aralioides HOM05D006324 ORTHO05D007463 4.2e-06 56.6 120 31.7
Cpa.g.sc12.280 Carica papaya HOM05D006324 ORTHO05D007463 5.5e-06 56.2 114 33.3
PRCOL_00001468 Prasinoderma coloniale HOM05D006324 ORTHO05D007463 9.3e-06 55.5 88 34.1


User provided reference genes

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