Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1955.6 1008 100.0
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 9.2e-81 306.2 700 31.7
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.6e-70 270.4 716 30.7
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 9.5e-70 269.6 709 31.7
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-60 238.8 747 29.0
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 9.0e-52 209.9 749 28.2
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 9.9e-51 206.5 733 27.4
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 2.9e-50 204.9 716 26.7
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.9e-50 204.9 708 27.5
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 8.4e-50 203.4 721 26.6
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.4e-49 202.6 737 27.0
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 1.9e-49 202.2 719 27.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 3.2e-49 201.4 752 27.4
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 3.2e-49 201.4 718 27.2
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 7.1e-49 200.3 717 27.3
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 1.6e-48 199.1 755 25.0
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 4.6e-48 197.6 719 26.3
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.3e-47 196.1 844 25.2
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 1.8e-47 195.7 719 26.1
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 2.3e-47 195.3 722 25.2
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 3.0e-47 194.9 723 26.4
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 3.0e-47 194.9 728 26.5
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.9e-47 194.5 731 27.5
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 3.9e-47 194.5 728 26.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 6.7e-47 193.7 748 24.9
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 6.7e-47 193.7 826 24.9
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 3.3e-46 191.4 712 27.9
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-46 191.4 737 26.3
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 3.3e-46 191.4 720 26.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 4.3e-46 191.0 755 25.8
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 5.6e-46 190.7 722 27.3
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 7.4e-46 190.3 748 25.9
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 7.4e-46 190.3 705 26.8
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 9.6e-46 189.9 726 26.4
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 1.6e-45 189.1 834 24.2
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.6e-45 189.1 722 25.3
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.6e-45 189.1 747 25.8
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 2.1e-45 188.7 745 25.4
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 3.6e-45 188.0 737 25.1
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 8.1e-45 186.8 814 26.9
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.4e-44 186.0 737 26.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.8e-44 185.7 718 26.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 2.4e-44 185.3 821 23.4
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 2.4e-44 185.3 740 25.7
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 3.1e-44 184.9 718 26.3
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 3.1e-44 184.9 743 26.0
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.0e-44 184.5 720 26.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 4.0e-44 184.5 723 27.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 1.5e-43 182.6 716 25.3
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.5e-43 182.6 778 25.4
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 2.0e-43 182.2 721 26.4
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 2.0e-43 182.2 727 25.9
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 2.0e-43 182.2 932 24.2
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 4.5e-43 181.0 718 25.9
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 7.6e-43 180.3 716 26.4
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 9.9e-43 179.9 749 26.0
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 1.3e-42 179.5 719 25.6
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.3e-42 179.5 753 25.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.3e-42 179.5 698 25.5
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.2e-42 178.7 936 25.3
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.9e-42 178.3 727 26.7
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 3.8e-42 177.9 704 25.6
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 3.8e-42 177.9 731 26.5
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 6.4e-42 177.2 704 26.3
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.1e-41 176.4 715 27.0
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.4e-41 176.0 710 26.6
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 1.4e-41 176.0 751 25.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.4e-41 176.0 746 25.6
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.4e-41 176.0 935 25.2
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.9e-41 175.6 710 25.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 1.9e-41 175.6 711 24.8
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 2.4e-41 175.3 937 24.1
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 3.2e-41 174.9 726 25.3
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-41 174.5 715 24.8
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 4.2e-41 174.5 804 25.4
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 5.5e-41 174.1 932 24.5
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.1e-41 173.7 753 25.5
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.2e-40 172.9 732 25.7
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.2e-40 172.9 702 26.1
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 2.7e-40 171.8 656 26.5
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 2.7e-40 171.8 799 25.0
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.3e-39 168.7 736 26.4
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 3.9e-39 167.9 422 29.1
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 8.7e-39 166.8 767 27.1
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 2.1e-37 162.2 724 25.1
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 3.7e-37 161.4 650 25.4
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 4.8e-37 161.0 718 24.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 4.8e-37 161.0 718 24.8
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 6.2e-37 160.6 833 23.5
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 8.1e-37 160.2 614 26.4
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 8.1e-37 160.2 721 25.0
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 2.0e-35 155.6 671 25.2
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 2.6e-35 155.2 717 24.5
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.3e-34 152.9 440 28.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-33 148.7 711 24.2
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 7.9e-32 143.7 716 24.6
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.3e-31 142.9 531 26.4
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 2.3e-31 142.1 325 32.0
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 3.9e-31 141.4 359 29.2
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 7.4e-30 137.1 444 25.7
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.3e-29 134.0 749 24.3
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.2e-29 133.7 978 23.0
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-28 132.1 290 33.1
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 5.3e-28 131.0 665 26.2
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 9.0e-28 130.2 553 25.5
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 5.0e-26 124.4 600 24.3
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 4.2e-25 121.3 506 25.9
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.2e-25 120.6 506 25.9
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.3e-23 115.5 345 28.7
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 9.7e-22 110.2 276 31.2
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 9.7e-22 110.2 501 23.4
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-21 109.4 368 27.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.2e-21 109.0 293 29.7
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.2e-21 107.1 288 29.9
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.8e-20 105.9 518 26.1
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.2e-18 99.0 499 23.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 5.0e-18 97.8 358 26.5
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.7e-16 92.0 545 21.3
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.9e-16 90.5 279 26.2
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 4.8e-13 81.3 316 26.6
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.4e-12 79.7 104 48.1
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.1e-09 70.1 85 45.9
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.9e-09 69.3 342 25.7
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 4.2e-09 68.2 97 42.3
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-08 66.6 182 28.6
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-08 66.6 88 44.3
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-08 66.6 88 44.3
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.1e-08 65.9 117 40.2
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.6e-08 65.1 96 37.5
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.7e-08 64.7 168 28.6
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 3.0e-07 62.0 449 22.3
Cre07.g312150 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.2e-07 61.2 78 42.3
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.2e-07 61.2 272 23.5
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.1e-06 60.1 149 32.2
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.3e-06 58.5 104 37.5


User provided reference genes

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