Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 0.0e+00 1567.4 802 100.0
Cfa026457 Carpinus fangiana HOM05D001787 ORTHO05D003488 3.4e-30 137.9 226 41.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.4e-28 132.5 513 24.4
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.5e-28 131.7 516 25.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.5e-28 131.7 527 25.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 9.4e-28 129.8 529 25.7
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.2e-27 129.4 532 25.6
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.1e-27 128.6 525 26.7
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 3.6e-27 127.9 424 27.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.8e-26 125.6 511 25.8
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.3e-26 125.2 368 27.2
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 2.3e-26 125.2 504 27.4
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.1e-25 122.9 513 25.5
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.5e-25 122.5 437 27.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.5e-25 122.5 520 23.7
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 2.0e-25 122.1 519 26.0
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.0e-25 122.1 507 25.8
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 4.4e-25 120.9 518 25.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 4.4e-25 120.9 542 25.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 5.7e-25 120.6 515 24.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.4e-25 120.2 503 24.5
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 7.4e-25 120.2 517 25.9
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 1.3e-24 119.4 506 23.1
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.7e-24 119.0 511 24.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.7e-24 119.0 511 24.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.7e-24 119.0 541 25.1
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.2e-24 118.6 513 24.4
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 2.2e-24 118.6 514 26.5
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-24 118.6 512 25.8
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.8e-24 118.2 517 26.1
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 3.7e-24 117.9 502 24.9
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 3.7e-24 117.9 503 24.3
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.7e-24 117.9 503 24.9
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 4.8e-24 117.5 509 24.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 4.8e-24 117.5 522 24.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 6.3e-24 117.1 518 26.4
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.3e-24 117.1 516 24.4
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 8.2e-24 116.7 505 25.0
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 8.2e-24 116.7 509 24.8
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 8.2e-24 116.7 513 26.3
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 8.2e-24 116.7 515 25.8
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.1e-23 116.3 509 24.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.1e-23 116.3 512 24.2
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.4e-23 115.9 501 24.8
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.4e-23 115.9 510 26.5
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.4e-23 115.9 438 27.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.4e-23 115.9 506 26.3
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.8e-23 115.5 512 24.6
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.8e-23 115.5 518 25.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.8e-23 115.5 333 30.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.8e-23 115.5 522 26.1
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.4e-23 115.2 504 25.0
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.4e-23 115.2 543 24.1
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.1e-23 114.8 404 26.7
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.1e-23 114.8 276 30.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 4.1e-23 114.4 502 24.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.1e-23 114.4 334 29.6
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 5.3e-23 114.0 278 31.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 5.3e-23 114.0 514 25.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 5.3e-23 114.0 514 24.5
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 7.0e-23 113.6 512 24.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 7.0e-23 113.6 514 24.9
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 7.0e-23 113.6 519 26.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 9.1e-23 113.2 519 26.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.2e-22 112.8 494 25.1
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.6e-22 112.5 276 31.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.6e-22 112.5 511 23.9
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.6e-22 112.5 524 24.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.0e-22 112.1 527 24.9
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.0e-22 112.1 512 25.2
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.6e-22 111.7 515 26.0
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 3.5e-22 111.3 449 24.7
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 4.5e-22 110.9 507 24.1
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-22 110.9 508 26.2
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.5e-22 110.9 513 25.7
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 5.9e-22 110.5 512 24.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 7.7e-22 110.2 503 25.0
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.7e-21 109.0 507 25.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.7e-21 109.0 502 23.1
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.2e-21 108.6 514 23.9
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.2e-21 108.6 252 31.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 5.0e-21 107.5 399 27.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 6.5e-21 107.1 500 25.0
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.1e-20 106.3 519 23.9
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.1e-20 106.3 503 23.5
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.9e-20 105.5 517 23.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.5e-20 105.1 515 24.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.2e-20 104.8 516 24.2
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.2e-20 104.8 375 26.7
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 4.2e-20 104.4 276 28.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 9.4e-20 103.2 539 23.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.6e-19 101.3 402 24.1
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 6.1e-19 100.5 389 27.0
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.8e-18 99.0 283 27.6
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 5.2e-18 97.4 532 24.8
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.1e-17 96.3 494 23.5
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.5e-17 95.9 437 24.5
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.3e-17 94.7 281 29.9
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 5.7e-17 94.0 302 28.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 4.8e-16 90.9 524 23.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.8e-15 89.0 510 22.4
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 5.9e-14 84.0 260 25.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.5e-12 78.6 438 23.5
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.0e-10 73.2 478 22.6
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.8e-10 70.5 98 42.9
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.5e-09 69.3 98 42.9
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-09 69.3 98 43.9
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-08 65.9 98 40.8
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 9.1e-07 60.1 524 21.4


User provided reference genes

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