Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.6e-255 884.4 441 100.0
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 7.3e-83 312.0 404 44.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 9.6e-83 311.6 413 43.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 9.6e-83 311.6 413 43.1
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 2.8e-82 310.1 397 45.1
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 2.8e-82 310.1 404 44.8
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.8e-82 309.3 397 44.6
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 8.1e-82 308.5 404 44.8
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.4e-81 307.8 419 44.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 3.1e-81 306.6 419 44.2
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 4.0e-81 306.2 419 43.2
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 4.0e-81 306.2 409 43.5
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 6.9e-81 305.4 404 44.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 9.0e-81 305.1 404 44.8
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.5e-80 304.3 419 42.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.5e-80 304.3 419 42.7
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.6e-80 303.5 407 43.5
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.6e-80 303.5 419 42.7
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 2.6e-80 303.5 419 42.2
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 2.6e-80 303.5 420 42.9
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 3.4e-80 303.1 404 44.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.4e-80 303.1 402 43.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.4e-80 303.1 404 44.8
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 3.4e-80 303.1 419 42.5
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 4.4e-80 302.8 419 42.5
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 5.8e-80 302.4 419 43.7
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 5.8e-80 302.4 404 43.3
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 5.8e-80 302.4 419 42.2
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 7.6e-80 302.0 419 42.0
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 7.6e-80 302.0 419 43.2
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 7.6e-80 302.0 419 42.2
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.9e-80 301.6 404 43.8
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 9.9e-80 301.6 424 42.0
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.3e-79 301.2 419 42.5
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.3e-79 301.2 404 44.3
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.3e-79 301.2 404 44.6
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.3e-79 301.2 404 42.8
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.3e-79 301.2 404 44.6
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.7e-79 300.8 420 42.6
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.7e-79 300.8 393 44.3
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.9e-79 300.1 400 42.8
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 3.8e-79 299.7 404 43.8
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 3.8e-79 299.7 393 43.8
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 3.8e-79 299.7 420 42.4
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.8e-79 299.7 404 43.6
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 6.4e-79 298.9 404 44.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.4e-79 298.9 413 42.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 6.4e-79 298.9 422 41.7
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 8.4e-79 298.5 419 42.7
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 8.4e-79 298.5 419 42.5
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 8.4e-79 298.5 429 41.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.1e-78 298.1 420 41.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.1e-78 298.1 390 44.9
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.1e-78 298.1 404 43.6
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.1e-78 298.1 404 42.8
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.1e-78 298.1 422 41.2
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.1e-78 298.1 404 43.8
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.4e-78 297.7 404 43.8
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.4e-78 297.7 393 43.3
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.4e-78 297.7 404 43.6
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.4e-78 297.7 419 43.0
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.4e-78 297.0 420 42.4
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.4e-78 297.0 404 44.3
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 2.4e-78 297.0 424 42.0
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.4e-78 297.0 419 42.5
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.4e-78 297.0 408 43.4
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 3.2e-78 296.6 421 42.3
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 3.2e-78 296.6 404 42.6
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.2e-78 296.6 415 42.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.2e-78 296.2 424 41.0
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.2e-78 296.2 404 43.6
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 4.2e-78 296.2 404 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 5.4e-78 295.8 399 43.9
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 5.4e-78 295.8 404 43.6
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 5.4e-78 295.8 404 43.8
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 7.1e-78 295.4 420 41.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 7.1e-78 295.4 400 43.0
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 9.3e-78 295.0 419 42.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-77 294.7 420 41.4
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.2e-77 294.7 420 41.4
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.2e-77 294.7 404 42.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-77 294.3 421 41.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.6e-77 294.3 421 41.1
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.6e-77 294.3 404 42.3
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.6e-77 294.3 421 41.3
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.6e-77 294.3 404 43.8
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.6e-77 294.3 404 43.8
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.6e-77 294.3 424 41.3
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.6e-77 294.3 422 41.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 2.1e-77 293.9 420 41.2
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 2.1e-77 293.9 419 42.0
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.1e-77 293.9 420 41.2
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 2.7e-77 293.5 420 40.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-77 293.5 404 43.1
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.7e-77 293.5 419 42.0
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.7e-77 293.5 419 41.5
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 3.5e-77 293.1 420 41.2
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 3.5e-77 293.1 420 41.2
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 3.5e-77 293.1 420 41.2
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 3.5e-77 293.1 422 41.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.5e-77 293.1 419 41.5
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 6.0e-77 292.4 420 41.2
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 6.0e-77 292.4 419 41.8
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.0e-76 291.6 404 41.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.0e-76 291.6 419 40.6
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.0e-76 291.6 420 40.7
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.3e-76 291.2 404 44.1
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.7e-76 290.8 404 43.6
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.3e-76 290.4 419 41.5
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 3.9e-76 289.7 393 43.3
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.9e-76 289.7 401 43.1
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 5.1e-76 289.3 420 40.5
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.7e-76 288.5 404 42.1
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.5e-75 287.7 455 40.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.5e-75 287.0 419 41.5
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.6e-74 284.3 419 40.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.1e-73 281.6 333 47.1
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.1e-73 281.6 439 40.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.4e-73 281.2 441 40.1
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.8e-73 280.8 397 41.6
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.2e-72 278.1 332 45.2
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.0e-72 277.3 332 46.7
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.6e-72 276.9 458 38.6
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.6e-72 276.9 484 37.6
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 3.4e-72 276.6 413 40.9
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.3e-71 274.6 400 41.8
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.2e-71 273.9 389 42.2
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 2.2e-71 273.9 389 41.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.9e-71 272.7 393 43.0
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 6.4e-71 272.3 421 39.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 4.2e-70 269.6 332 44.0
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 8.7e-68 261.9 398 40.2
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 2.4e-65 253.8 392 39.5
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-64 250.8 513 35.1
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.7e-55 221.1 312 43.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.5e-54 216.1 326 41.4
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.8e-52 211.1 406 36.2
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.5e-51 208.0 190 55.3
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-50 204.5 404 33.9
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 6.3e-50 202.6 187 55.6
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.9e-49 199.1 310 41.0
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 8.5e-47 192.2 401 35.9
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.0e-36 157.1 216 42.1
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-35 155.2 146 52.1
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.0e-35 154.5 145 52.4
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-32 144.8 187 43.3
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.6e-29 134.8 127 55.1
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 6.1e-29 132.9 244 36.1
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.8e-26 124.0 124 54.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.1e-21 107.8 231 33.8
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 3.6e-21 107.1 202 35.1
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 3.0e-20 104.0 217 32.3


User provided reference genes

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