Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.9e-275 951.8 468 100.0
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.8e-88 330.1 409 41.6
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.8e-88 330.1 409 42.1
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 6.1e-88 328.9 409 41.1
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.3e-87 327.0 409 41.1
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.3e-87 327.0 409 41.8
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.3e-87 327.0 409 41.3
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.1e-87 326.6 422 40.8
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.1e-87 326.6 422 40.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.0e-87 326.2 409 40.6
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 5.2e-87 325.9 409 41.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.2e-87 325.9 409 41.1
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 6.8e-87 325.5 409 40.3
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 6.8e-87 325.5 409 41.6
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 6.8e-87 325.5 409 41.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 8.9e-87 325.1 409 40.8
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 8.9e-87 325.1 409 40.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 8.9e-87 325.1 409 41.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-86 324.7 409 41.1
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.2e-86 324.7 409 40.6
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.2e-86 324.7 422 39.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.5e-86 324.3 409 41.1
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.5e-86 324.3 409 41.1
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.0e-86 323.9 409 41.8
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 2.0e-86 323.9 422 40.5
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.6e-86 323.6 409 41.1
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.6e-86 323.6 409 41.3
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.6e-86 323.6 409 41.1
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.4e-86 323.2 409 41.1
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 3.4e-86 323.2 422 39.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.4e-86 323.2 409 40.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 3.4e-86 323.2 409 40.1
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.4e-86 323.2 422 41.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.4e-86 322.8 409 41.3
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 5.8e-86 322.4 409 40.6
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 5.8e-86 322.4 409 41.1
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 5.8e-86 322.4 409 40.6
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.3e-85 321.2 409 40.8
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-85 321.2 422 39.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.3e-85 321.2 409 40.3
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.7e-85 320.9 409 41.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.7e-85 320.9 409 40.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.7e-85 320.9 422 40.3
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.7e-85 320.9 409 40.8
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.2e-85 320.5 409 41.6
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 2.2e-85 320.5 409 40.8
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.2e-85 320.5 409 39.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.2e-85 320.5 409 40.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.2e-85 320.5 409 40.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.9e-85 320.1 409 40.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.9e-85 320.1 403 41.9
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 3.7e-85 319.7 410 40.5
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 3.7e-85 319.7 409 40.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 3.7e-85 319.7 410 40.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.7e-85 319.7 409 41.3
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 4.9e-85 319.3 409 41.1
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 4.9e-85 319.3 408 40.7
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 4.9e-85 319.3 410 40.5
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.9e-85 319.3 409 41.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.4e-85 318.9 409 39.9
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 6.4e-85 318.9 409 41.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.4e-85 318.9 409 40.8
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.4e-85 318.9 409 41.1
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.4e-85 318.9 421 40.6
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.4e-85 318.9 409 40.3
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 8.3e-85 318.5 410 40.0
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 8.3e-85 318.5 410 39.8
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.1e-84 318.2 412 41.3
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.1e-84 318.2 412 41.3
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.1e-84 318.2 424 39.6
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.1e-84 318.2 422 40.3
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.1e-84 318.2 410 40.5
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.9e-84 317.4 409 40.3
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.4e-84 317.0 409 41.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.1e-84 316.2 409 40.3
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.1e-84 316.2 422 40.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.4e-84 315.8 409 40.3
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.4e-84 315.8 409 39.4
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.2e-83 314.7 423 39.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.2e-83 314.7 409 39.4
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.0e-83 313.9 403 40.0
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 2.0e-83 313.9 409 39.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.7e-83 313.5 433 39.5
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 2.7e-83 313.5 411 39.2
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.7e-83 313.5 403 40.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.5e-83 313.2 409 39.9
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.5e-83 313.2 422 39.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 6.0e-83 312.4 422 39.3
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 6.0e-83 312.4 409 39.9
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 7.8e-83 312.0 409 39.4
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 7.8e-83 312.0 409 39.1
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.0e-82 311.6 409 40.1
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.0e-82 311.6 411 39.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.3e-82 311.2 410 40.2
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.3e-82 311.2 409 39.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.7e-82 310.8 409 40.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.3e-82 310.5 409 39.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 3.0e-82 310.1 404 41.3
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.0e-82 310.1 409 39.9
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.9e-82 309.7 422 39.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.9e-82 309.7 418 39.5
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.0e-82 309.3 387 41.1
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 8.6e-82 308.5 409 37.7
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.1e-81 308.1 409 39.4
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.1e-81 308.1 409 39.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.5e-81 307.8 406 38.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.5e-81 307.8 411 38.9
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.9e-81 307.4 411 38.7
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.3e-81 306.6 403 39.7
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 5.6e-81 305.8 409 38.9
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 9.5e-81 305.1 403 39.7
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.6e-80 304.3 403 39.5
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.1e-80 303.9 387 40.6
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 3.6e-80 303.1 448 37.1
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 6.2e-80 302.4 452 36.7
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.6e-78 297.0 420 36.0
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.6e-78 297.0 404 39.1
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 5.8e-78 295.8 437 37.1
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.7e-77 294.3 413 37.8
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.7e-77 294.3 403 38.7
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.9e-77 293.5 398 39.7
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 6.4e-77 292.4 401 38.9
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 4.1e-76 289.7 389 38.8
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.1e-75 287.3 370 40.8
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.7e-75 287.0 372 40.1
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 4.6e-75 286.2 426 37.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 6.0e-75 285.8 417 37.9
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.5e-70 271.2 426 36.9
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.4e-68 263.8 406 36.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.4e-68 262.7 409 35.9
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 7.8e-67 258.8 405 36.5
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.0e-66 258.5 334 41.0
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.2e-64 251.5 336 39.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 3.6e-64 250.0 327 41.0
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.7e-64 249.6 334 39.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.3e-58 230.7 339 39.8
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 7.3e-57 225.7 348 35.1
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.8e-53 213.4 279 38.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.9e-49 201.1 283 38.5
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 3.8e-37 160.2 199 44.2
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.5e-36 157.5 186 41.9
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.6e-35 154.8 185 42.2
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.6e-24 118.2 284 28.9
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.1e-23 115.5 277 28.9
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.2e-16 91.3 91 46.2
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 5.0e-13 80.1 94 41.5


User provided reference genes

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