Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 0.0e+00 1352.4 688 100.0
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 2.0e-39 168.3 300 40.0
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.3e-37 161.0 375 34.9
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 9.5e-37 159.5 357 36.7
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 6.1e-36 156.8 311 37.9
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.8e-35 155.2 297 37.7
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.3e-35 154.8 301 36.9
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.1e-35 154.5 287 36.9
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 5.2e-35 153.7 368 34.5
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 6.8e-35 153.3 297 37.4
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.4e-34 150.6 359 35.1
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 7.5e-34 149.8 351 34.5
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 9.8e-34 149.4 294 36.4
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 9.8e-34 149.4 330 34.5
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.7e-33 148.7 304 36.5
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 2.2e-33 148.3 288 36.8
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 2.2e-33 148.3 346 34.7
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.9e-33 147.9 288 37.2
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.7e-33 147.5 271 38.0
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 4.9e-33 147.1 294 35.4
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 4.9e-33 147.1 363 32.8
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 8.3e-33 146.4 343 33.8
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.1e-32 146.0 298 34.9
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.1e-32 146.0 298 34.9
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-32 146.0 297 37.0
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.4e-32 145.6 323 35.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.4e-32 145.6 294 36.7
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.9e-32 145.2 293 37.5
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.9e-32 145.2 300 34.7
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.4e-32 144.8 301 35.9
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 3.2e-32 144.4 274 34.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.2e-32 144.4 351 33.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 3.2e-32 144.4 313 36.1
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 4.1e-32 144.1 297 37.7
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 5.4e-32 143.7 317 34.4
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 9.2e-32 142.9 294 35.4
Cre12.g508852 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.2e-31 142.5 142 50.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.6e-31 142.1 342 34.5
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.6e-31 142.1 295 37.3
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.0e-31 141.7 296 37.2
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 2.0e-31 141.7 324 34.3
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 2.7e-31 141.4 323 35.3
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 3.5e-31 141.0 290 36.2
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 3.5e-31 141.0 291 35.7
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 4.6e-31 140.6 296 36.1
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 6.0e-31 140.2 303 36.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 6.0e-31 140.2 300 36.3
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 6.0e-31 140.2 309 36.6
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 6.0e-31 140.2 261 39.1
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 7.8e-31 139.8 296 36.1
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.0e-30 139.4 303 36.3
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.0e-30 139.4 314 36.0
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.0e-30 139.4 342 33.6
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.0e-30 139.4 351 32.8
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.3e-30 139.0 296 35.8
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.3e-30 138.3 297 36.4
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.3e-30 138.3 303 36.3
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 2.3e-30 138.3 293 35.5
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 2.3e-30 138.3 296 35.1
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 3.0e-30 137.9 323 34.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 3.0e-30 137.9 294 34.4
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 3.0e-30 137.9 292 34.2
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 3.9e-30 137.5 293 37.5
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 5.0e-30 137.1 297 35.4
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 5.0e-30 137.1 296 36.8
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 6.6e-30 136.7 296 35.1
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.6e-30 136.7 300 34.0
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 8.6e-30 136.3 291 35.1
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.1e-29 136.0 304 35.5
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.1e-29 136.0 367 32.2
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.5e-29 135.6 297 34.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.9e-29 135.2 295 34.9
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.9e-29 135.2 321 34.3
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 2.5e-29 134.8 324 33.3
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.5e-29 134.8 292 35.3
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.6e-29 133.7 311 34.4
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 7.3e-29 133.3 306 36.9
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 9.5e-29 132.9 295 34.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 9.5e-29 132.9 295 34.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 9.5e-29 132.9 324 33.3
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 9.5e-29 132.9 298 34.9
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.2e-28 132.5 293 33.4
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.2e-28 132.5 295 34.6
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.1e-28 131.7 297 33.7
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.6e-28 131.0 297 35.0
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.1e-27 129.4 302 34.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.4e-27 129.0 295 33.9
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.2e-27 127.1 269 35.3
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 5.2e-27 127.1 350 32.9
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.8e-27 126.7 269 34.9
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.2e-26 125.9 282 33.7
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.2e-26 125.9 309 33.0
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.2e-26 125.9 286 35.0
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.5e-26 125.6 310 33.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.5e-26 125.6 269 34.9
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 5.8e-26 123.6 285 34.7
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 9.8e-26 122.9 300 34.0
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 8.3e-25 119.8 328 31.1
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.1e-24 119.4 284 34.2
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.9e-24 118.6 274 34.7
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.9e-24 118.6 355 30.4
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.4e-24 118.2 270 34.8
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.2e-24 117.9 240 37.5
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.1e-24 117.5 232 37.5
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.4e-24 117.1 305 32.8
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 9.2e-24 116.3 209 38.8
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.6e-23 115.5 281 33.5
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 3.5e-23 114.4 226 36.7
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 3.5e-23 114.4 323 30.7
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.8e-23 113.2 239 35.6
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.0e-22 112.8 284 32.4
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.3e-22 112.5 333 30.9
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.7e-22 112.1 224 37.1
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 2.3e-22 111.7 279 32.6
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 3.0e-22 111.3 308 30.8
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 5.1e-22 110.5 229 35.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 5.1e-22 110.5 229 35.8
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 5.1e-22 110.5 210 38.1
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 5.1e-22 110.5 226 35.8
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.5e-21 109.0 304 30.9
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.4e-19 102.4 241 34.9
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.6e-18 98.2 250 34.0
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.6e-18 98.2 210 35.7
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.4e-18 97.8 303 32.0
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.7e-17 95.5 312 29.2
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 2.2e-17 95.1 243 33.3
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 4.9e-17 94.0 207 34.3
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.4e-17 93.6 287 30.7
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 8.3e-17 93.2 167 36.5
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 4.6e-15 87.4 176 35.2
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.7e-14 85.5 208 33.2
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 9.6e-13 79.7 280 27.1
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.1e-12 78.6 143 36.4
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.8e-10 70.5 204 30.9
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 2.1e-07 62.0 215 30.7
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 3.5e-07 61.2 215 30.7


User provided reference genes

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