Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025724 Carpinus fangiana HOM05D001842 ORTHO05D002051 0.0e+00 3730.3 1978 100.0
MCO05G352 Micromonas commoda HOM05D001842 ORTHO05D002051 4.4e-18 99.0 241 31.1
BraA07t29245Z Brassica rapa HOM05D001842 ORTHO05D001849 3.5e-15 89.4 464 24.4
AagrBONN_evm.TU.Sc2ySwM_228.3889 Anthoceros agrestis HOM05D001842 ORTHO05D001849 4.5e-15 89.0 351 26.2
Lsat_1_v5_gn_2_73740 Lactuca sativa HOM05D001842 ORTHO05D001849 5.5e-13 82.0 349 26.1
Haze_22829 Corylus avellana HOM05D001842 ORTHO05D001849 1.4e-11 77.4 467 24.0
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 4.0e-11 75.9 582 22.9
CSS0011105 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.2e-10 74.3 332 25.0
BolC8t49733H Brassica oleracea HOM05D001842 ORTHO05D001849 1.5e-10 73.9 681 21.4
CDE07G1300 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 1.5e-10 73.9 628 22.3
Aa31LG7G4920 Aethionema arabicum HOM05D001842 ORTHO05D001849 2.0e-10 73.6 415 23.6
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 2.6e-10 73.2 653 21.9
unitig_88.g27776 Utricularia gibba HOM05D001842 ORTHO05D001849 2.6e-10 73.2 636 21.7
DCAR_013929 Daucus carota HOM05D001842 ORTHO05D001849 3.4e-10 72.8 195 31.3
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 3.4e-10 72.8 699 21.3
CsaV3_4G037410 Cucumis sativus L. HOM05D001842 ORTHO05D001849 9.8e-10 71.2 795 22.9
Lsat_1_v5_gn_8_112480 Lactuca sativa HOM05D001842 ORTHO05D001849 9.8e-10 71.2 622 21.5
FAN04G2289 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.3e-09 70.9 692 22.0
PGR083G1188 Punica granatum HOM05D001842 ORTHO05D001849 1.3e-09 70.9 653 21.7
Carub.0001s2021 Capsella rubella HOM05D001842 ORTHO05D001849 1.7e-09 70.5 665 21.2
FAN08G1553 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.2e-09 70.1 690 22.5
HanXRQChr14g0442891 Helianthus annuus HOM05D001842 ORTHO05D001849 2.2e-09 70.1 657 22.7
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 2.8e-09 69.7 520 21.9
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 2.8e-09 69.7 489 24.5
Gohir.D01G089100 Gossypium hirsutum HOM05D001842 ORTHO05D001849 4.8e-09 68.9 673 21.4
Gohir.A01G103800 Gossypium hirsutum HOM05D001842 ORTHO05D001849 6.3e-09 68.6 673 21.4
HanXRQChr14g0427401 Helianthus annuus HOM05D001842 ORTHO05D001849 6.3e-09 68.6 177 32.2
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 8.3e-09 68.2 94 35.1
MBI08_g37961_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 8.3e-09 68.2 118 35.6
ClCG11G018830 Citrullus lanatus HOM05D001842 ORTHO05D001849 1.1e-08 67.8 808 22.5
Sopen04g036180 Solanum pennellii HOM05D001842 ORTHO05D001849 1.1e-08 67.8 162 29.0
TPR.G38237 Trifolium pratense HOM05D001842 ORTHO05D001849 1.1e-08 67.8 208 28.8
arahy.Tifrunner.gnm1.ann1.RT0S28 Arachis hypogaea HOM05D001842 ORTHO05D001849 1.4e-08 67.4 703 21.9
SalBow5G1010 Salvia bowleyana HOM05D001842 ORTHO05D001849 1.4e-08 67.4 109 37.6
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.4e-08 67.4 162 29.0
Actinidia37913 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.8e-08 67.0 151 31.8
MSTRG.3637 Avicennia marina HOM05D001842 ORTHO05D001849 1.8e-08 67.0 130 31.5
C08p20960 Brassica napus HOM05D001842 ORTHO05D001849 1.8e-08 67.0 669 20.9
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 1.8e-08 67.0 686 22.6
Lsat_1_v5_gn_2_1961 Lactuca sativa HOM05D001842 ORTHO05D001849 1.8e-08 67.0 188 30.3
Hma1.2p1_0612F.1_g188880 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 2.4e-08 66.6 93 36.6
RcHm_v2.0_Chr6g0280871 Rosa chinensis HOM05D001842 ORTHO05D001849 2.4e-08 66.6 141 31.2
GSVIVG01013392001 Vitis vinifera HOM05D001842 ORTHO05D001849 2.4e-08 66.6 692 22.4
arahy.Tifrunner.gnm1.ann1.84FHQN Arachis hypogaea HOM05D001842 ORTHO05D001849 3.1e-08 66.2 378 23.5
MSTRG.988 Avicennia marina HOM05D001842 ORTHO05D001849 3.1e-08 66.2 142 31.7
BcaC05g26080 Brassica carinata HOM05D001842 ORTHO05D001849 3.1e-08 66.2 127 29.9
Dinv31963 Davidia involucrata HOM05D001842 ORTHO05D001849 3.1e-08 66.2 113 33.6
Thhalv10006674m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 3.1e-08 66.2 660 21.1
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 4.1e-08 65.9 667 21.6
MELO3C017039.2 Cucumis melo HOM05D001842 ORTHO05D001849 4.1e-08 65.9 799 23.2
Gorai.002G114800 Gossypium raimondii HOM05D001842 ORTHO05D001849 4.1e-08 65.9 674 21.2
HanXRQChr09g0259431 Helianthus annuus HOM05D001842 ORTHO05D001849 4.1e-08 65.9 592 21.1
Lj1g0018894 Lotus japonicus HOM05D001842 ORTHO05D001849 4.1e-08 65.9 706 20.7
Phvul.009G012300 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 4.1e-08 65.9 204 28.9
CSS0010055 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 5.4e-08 65.5 332 23.8
SGA_v2.0_scaffold319G48553 Striga asiatica HOM05D001842 ORTHO05D001849 5.4e-08 65.5 302 24.8
SHI29549 Sapria himalayana HOM05D001842 ORTHO05D001849 7.0e-08 65.1 205 30.2
Sopen02g012560 Solanum pennellii HOM05D001842 ORTHO05D001849 9.1e-08 64.7 137 32.1
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 9.1e-08 64.7 91 37.4
Carub.0001s2105 Capsella rubella HOM05D001842 ORTHO05D001849 1.2e-07 64.3 358 24.3
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 1.2e-07 64.3 617 21.4
Os03g0130500 Oryza sativa ssp. japonica HOM05D001842 ORTHO05D001849 1.2e-07 64.3 384 22.7
QL02p015109 Quercus lobata HOM05D001842 ORTHO05D001849 1.2e-07 64.3 670 22.2
A06p17700 Brassica napus HOM05D001842 ORTHO05D001849 1.6e-07 63.9 110 34.5
BraA06t24862Z Brassica rapa HOM05D001842 ORTHO05D001849 1.6e-07 63.9 110 34.5
Migut.H02211 Erythranthe guttata HOM05D001842 ORTHO05D001849 1.6e-07 63.9 288 25.7
Gohir.A07G171600 Gossypium hirsutum HOM05D001842 ORTHO05D001849 1.6e-07 63.9 135 34.8
Nitab4.5_0000467g0080 Nicotiana tabacum HOM05D001842 ORTHO05D001849 1.6e-07 63.9 109 33.9
THA.LOC104812085 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 1.6e-07 63.9 341 24.3
TWI56G1388 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 1.6e-07 63.9 680 22.9
AL1G34770 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 2.0e-07 63.5 310 24.5
CANSAT11G0401 Cannabis sativa HOM05D001842 ORTHO05D001849 2.0e-07 63.5 680 21.6
Cfa026897 Carpinus fangiana HOM05D001842 ORTHO05D125724 2.0e-07 63.5 113 33.6
ClCG02G003430 Citrullus lanatus HOM05D001842 ORTHO05D001849 2.0e-07 63.5 543 22.1
Ciclev10014814m.g Citrus clementina HOM05D001939 ORTHO05D002051 2.0e-07 63.5 98 35.7
CsaV3_7G001880 Cucumis sativus L. HOM05D001842 ORTHO05D001849 2.0e-07 63.5 538 21.2
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 2.0e-07 63.5 324 22.8
Rhsim02G0104600 Rhododendron simsii HOM05D001939 ORTHO05D002051 2.0e-07 63.5 87 35.6
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 2.0e-07 63.5 130 34.6
Aa31LG7G5600 Aethionema arabicum HOM05D001842 ORTHO05D001849 2.7e-07 63.2 110 34.5
C07p22040 Brassica napus HOM05D001842 ORTHO05D001849 2.7e-07 63.2 110 34.5
BolC7t42734H Brassica oleracea HOM05D001842 ORTHO05D001849 2.7e-07 63.2 110 34.5
Peaxi162Scf00580g00016 Petunia axillaris HOM05D001842 ORTHO05D001849 2.7e-07 63.2 109 33.0
arahy.Tifrunner.gnm1.ann1.3BY6RX Arachis hypogaea HOM05D001842 ORTHO05D001849 3.5e-07 62.8 87 37.9
C05p20600 Brassica napus HOM05D001842 ORTHO05D001849 3.5e-07 62.8 110 34.5
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 3.5e-07 62.8 342 23.4
THA.LOC104809853 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 3.5e-07 62.8 692 21.2
vmacro23324 Vaccinium macrocarpon HOM05D001939 ORTHO05D002051 3.5e-07 62.8 82 37.8
VMungo1309G0061 Vigna mungo HOM05D001842 ORTHO05D001849 3.5e-07 62.8 138 31.9
EL10Ac1g01913 Beta vulgaris HOM05D001842 ORTHO05D001849 4.5e-07 62.4 119 31.9
Cpa.g.sc284.11 Carica papaya HOM05D001939 ORTHO05D002051 4.5e-07 62.4 88 35.2
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 4.5e-07 62.4 247 27.1
ECA100G0010 Erigeron canadensis HOM05D001939 ORTHO05D002051 4.5e-07 62.4 80 38.8
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 4.5e-07 62.4 528 22.0
Sabra05G0084600 Salix brachista HOM05D001842 ORTHO05D001849 4.5e-07 62.4 93 35.5
Potri.005G102200 Populus trichocarpa HOM05D001842 ORTHO05D001849 5.9e-07 62.0 89 37.1
unitig_22.g5814 Utricularia gibba HOM05D001842 ORTHO05D001849 5.9e-07 62.0 93 36.6
Cpa.g.sc513.5 Carica papaya HOM05D001939 ORTHO05D002051 7.7e-07 61.6 88 38.6
Lj4C8G7 Lonicera japonica HOM05D001842 ORTHO05D001849 7.7e-07 61.6 169 29.0
MD06G1007400 Malus domestica HOM05D001842 ORTHO05D001849 7.7e-07 61.6 687 21.3
PGR004G2851 Punica granatum HOM05D001939 ORTHO05D002051 7.7e-07 61.6 87 36.8
Thecc.06G230900 Theobroma cacao HOM05D001939 ORTHO05D002051 7.7e-07 61.6 95 36.8
Actinidia39264 Actinidia chinensis HOM05D001939 ORTHO05D002051 1.0e-06 61.2 82 35.4
MELO3C013251.2 Cucumis melo HOM05D001842 ORTHO05D001849 1.0e-06 61.2 547 20.8
Psat1g177280 Pisum sativum HOM05D001939 ORTHO05D002051 1.0e-06 61.2 86 36.0
arahy.Tifrunner.gnm1.ann1.QR5N80 Arachis hypogaea HOM05D001939 ORTHO05D002051 1.3e-06 60.8 82 36.6
arahy.Tifrunner.gnm1.ann1.US5JJQ Arachis hypogaea HOM05D001939 ORTHO05D002051 1.3e-06 60.8 82 36.6
Hma1.2p1_0699F.1_g205520 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 1.3e-06 60.8 393 23.7
RhsimUnG0248000 Rhododendron simsii HOM05D001939 ORTHO05D002051 1.3e-06 60.8 94 33.0
SMO358G0543 Selaginella moellendorffii HOM05D001842 ORTHO05D001849 1.3e-06 60.8 77 40.3
Hund23414 Selenicereus undatus HOM05D001939 ORTHO05D002051 1.3e-06 60.8 77 39.0
AT1G21630 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 1.7e-06 60.5 310 23.9
CAN.G1238.17 Capsicum annuum HOM05D001842 ORTHO05D001849 1.7e-06 60.5 160 30.0
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 1.7e-06 60.5 89 36.0
Duzib264G1083 Durio zibethinus HOM05D001842 ORTHO05D001849 1.7e-06 60.5 74 36.5
Thhalv10028561m.g Eutrema salsugineum HOM05D001939 ORTHO05D002051 1.7e-06 60.5 82 36.6
FvH4_2g16750 Fragaria vesca HOM05D001842 ORTHO05D001849 1.7e-06 60.5 138 32.6
FvH4_5g25580 Fragaria vesca HOM05D001842 ORTHO05D001849 1.7e-06 60.5 686 21.1
FAN24G0597 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.7e-06 60.5 138 32.6
Potri.001G356300 Populus trichocarpa HOM05D001939 ORTHO05D002051 1.7e-06 60.5 75 38.7
Solyc11g012020.2 Solanum lycopersicum HOM05D001939 ORTHO05D002051 1.7e-06 60.5 131 30.5
Carub.0006s3200 Capsella rubella HOM05D001939 ORTHO05D002051 2.3e-06 60.1 82 36.6
CARHR021980 Cardamine hirsuta HOM05D001842 ORTHO05D001849 2.3e-06 60.1 326 23.9
AUR62021885 Chenopodium quinoa HOM05D001939 ORTHO05D002051 2.3e-06 60.1 80 37.5
Duzib235G1241 Durio zibethinus HOM05D001939 ORTHO05D002051 2.3e-06 60.1 75 41.3
Eucgr.D01381 Eucalyptus grandis HOM05D001939 ORTHO05D002051 2.3e-06 60.1 75 38.7
FAN15G0485 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.3e-06 60.1 139 31.7
LjContig00081g0008818 Lotus japonicus HOM05D001842 ORTHO05D001849 2.3e-06 60.1 388 21.4
MBI05_g14363_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 2.3e-06 60.1 184 28.8
Mapoly0065s0050 Marchantia polymorpha HOM05D001842 ORTHO05D001849 2.3e-06 60.1 89 37.1
Hund21159 Selenicereus undatus HOM05D001939 ORTHO05D002051 2.3e-06 60.1 80 37.5
TWI38G0060 Tripterygium wilfordii HOM05D001939 ORTHO05D002051 2.3e-06 60.1 93 34.4
vmacro15786 Vaccinium macrocarpon HOM05D001939 ORTHO05D002051 2.3e-06 60.1 82 36.6
AT1G20760 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 2.9e-06 59.7 91 33.0
CAN.G311.131 Capsicum annuum HOM05D001842 ORTHO05D001849 2.9e-06 59.7 282 23.8
AUR62012773 Chenopodium quinoa HOM05D001939 ORTHO05D002051 2.9e-06 59.7 80 37.5
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 2.9e-06 59.7 391 25.1
Prupe.4G222700 Prunus persica HOM05D001939 ORTHO05D002051 2.9e-06 59.7 80 35.0
AT4G05520 Arabidopsis thaliana HOM05D001939 ORTHO05D002051 3.8e-06 59.3 82 35.4
Sp6g04800 Schrenkiella parvula HOM05D001939 ORTHO05D002051 3.8e-06 59.3 82 35.4
Aa31LG9G9980 Aethionema arabicum HOM05D001939 ORTHO05D002051 5.0e-06 58.9 82 36.6
Ca_21054_v3 Cicer arietinum L. HOM05D001939 ORTHO05D002051 5.0e-06 58.9 94 34.0
Haze_06895 Corylus avellana HOM05D001939 ORTHO05D002051 5.0e-06 58.9 85 34.1
Thhalv10006584m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 5.0e-06 58.9 310 24.2
Lj4g0017128 Lotus japonicus HOM05D001939 ORTHO05D002051 5.0e-06 58.9 82 35.4
Os04g0669300 Oryza sativa ssp. japonica HOM05D001939 ORTHO05D002051 5.0e-06 58.9 75 38.7
QL03p008322 Quercus lobata HOM05D001939 ORTHO05D002051 5.0e-06 58.9 82 34.1
QL05p069950 Quercus lobata HOM05D001939 ORTHO05D002051 5.0e-06 58.9 82 34.1
Sed0009695 Sechium edule HOM05D001842 ORTHO05D001849 5.0e-06 58.9 553 21.7
Hund06365 Selenicereus undatus HOM05D001842 ORTHO05D001849 5.0e-06 58.9 495 23.2
Zm00001eb066880 Zea mays HOM05D001939 ORTHO05D002051 5.0e-06 58.9 88 36.4
Zm00001eb225790 Zea mays HOM05D001939 ORTHO05D002051 5.0e-06 58.9 75 38.7
AL6G47690 Arabidopsis lyrata HOM05D001939 ORTHO05D002051 6.6e-06 58.5 82 35.4
Haze_27037 Corylus avellana HOM05D001939 ORTHO05D002051 6.6e-06 58.5 87 34.5
Medtr2g025180 Medicago truncatula HOM05D001939 ORTHO05D002051 6.6e-06 58.5 82 35.4
Nn1g07325 Nelumbo nucifera HOM05D001939 ORTHO05D002051 6.6e-06 58.5 80 37.5
Os02g0158100 Oryza sativa ssp. japonica HOM05D001939 ORTHO05D002051 6.6e-06 58.5 75 40.0
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 8.6e-06 58.2 383 21.7
BcaB01g01774 Brassica carinata HOM05D001939 ORTHO05D002051 8.6e-06 58.2 82 35.4
A09p26590 Brassica napus HOM05D001939 ORTHO05D002051 8.6e-06 58.2 82 35.4
C09p33710 Brassica napus HOM05D001939 ORTHO05D002051 8.6e-06 58.2 82 35.4
BraA09t38232Z Brassica rapa HOM05D001939 ORTHO05D002051 8.6e-06 58.2 82 35.4
Carub.0003s2024 Capsella rubella HOM05D001939 ORTHO05D002051 8.6e-06 58.2 80 37.5
CBR_g4194 Chara braunii HOM05D001842 ORTHO05D001849 8.6e-06 58.2 165 30.3
AUR62035136 Chenopodium quinoa HOM05D001842 ORTHO05D001849 8.6e-06 58.2 236 27.1
Cc04_g03910 Coffea canephora HOM05D001939 ORTHO05D002051 8.6e-06 58.2 94 33.0
ECA238G0776 Erigeron canadensis HOM05D001842 ORTHO05D001849 8.6e-06 58.2 510 22.7
Pp3c26_15400 Physcomitrium patens HOM05D001842 ORTHO05D001849 8.6e-06 58.2 89 36.0
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 8.6e-06 58.2 554 22.2
SMO116G0065 Selaginella moellendorffii HOM05D001939 ORTHO05D002051 8.6e-06 58.2 90 32.2
Thecc.01G004600 Theobroma cacao HOM05D001842 ORTHO05D001849 8.6e-06 58.2 330 24.8
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 8.6e-06 58.2 499 22.8
HPP92_026382 Vanilla planifolia HOM05D001842 ORTHO05D001849 8.6e-06 58.2 89 33.7


User provided reference genes

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