Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025660 Carpinus fangiana HOM05D005315 ORTHO05D006589 1.4e-244 849.4 499 100.0
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 1.0e-19 102.4 343 30.0
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.7e-19 101.7 343 30.0
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 2.2e-19 101.3 339 29.8
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 3.8e-19 100.5 341 29.3
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 5.0e-19 100.1 349 30.7
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 6.5e-19 99.8 338 29.6
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 8.5e-19 99.4 361 28.5
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 8.5e-19 99.4 343 29.4
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 1.1e-18 99.0 335 28.4
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 1.9e-18 98.2 339 28.6
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 1.9e-18 98.2 338 29.9
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 3.2e-18 97.4 337 28.5
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 3.2e-18 97.4 339 27.4
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 4.2e-18 97.1 342 28.7
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 4.2e-18 97.1 339 27.7
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 5.5e-18 96.7 342 28.7
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 7.2e-18 96.3 336 28.0
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 7.2e-18 96.3 336 28.0
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 7.2e-18 96.3 336 28.0
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 9.3e-18 95.9 339 27.7
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 9.3e-18 95.9 337 27.9
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 9.3e-18 95.9 340 27.6
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 9.3e-18 95.9 342 28.1
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 1.2e-17 95.5 346 28.3
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 1.2e-17 95.5 360 27.8
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 2.1e-17 94.7 350 28.0
Gorai.008G008700 Gossypium raimondii HOM05D005315 ORTHO05D006589 2.1e-17 94.7 336 30.1
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 2.1e-17 94.7 338 27.2
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 2.1e-17 94.7 340 28.2
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 2.7e-17 94.4 358 29.9
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 2.7e-17 94.4 333 28.2
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 2.7e-17 94.4 340 28.2
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 2.7e-17 94.4 343 27.1
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 3.6e-17 94.0 338 27.5
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 4.6e-17 93.6 333 28.2
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 6.1e-17 93.2 339 27.7
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 6.1e-17 93.2 339 27.7
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 6.1e-17 93.2 322 29.5
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 7.9e-17 92.8 342 29.2
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 7.9e-17 92.8 331 28.4
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 7.9e-17 92.8 337 28.5
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 1.0e-16 92.4 339 28.0
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 1.8e-16 91.7 338 27.5
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 1.8e-16 91.7 337 27.6
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 2.3e-16 91.3 335 27.8
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 2.3e-16 91.3 339 27.4
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 2.3e-16 91.3 339 26.8
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 3.0e-16 90.9 335 27.5
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 3.9e-16 90.5 333 27.9
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 3.9e-16 90.5 342 28.1
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 3.9e-16 90.5 354 26.8
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 3.9e-16 90.5 340 27.4
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 5.1e-16 90.1 333 27.9
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 6.7e-16 89.7 341 27.3
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 6.7e-16 89.7 341 27.3
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 8.7e-16 89.4 338 26.6
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 8.7e-16 89.4 339 26.5
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 1.5e-15 88.6 339 27.4
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 1.9e-15 88.2 381 26.8
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 1.9e-15 88.2 341 27.3
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 2.5e-15 87.8 342 27.2
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 3.3e-15 87.4 341 27.3
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 3.3e-15 87.4 336 26.2
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 4.3e-15 87.0 341 26.7
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 4.3e-15 87.0 339 26.3
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 4.3e-15 87.0 333 26.7
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 5.7e-15 86.7 338 26.0
PRCOL_00001709 Prasinoderma coloniale HOM05D005315 ORTHO05D006589 7.4e-15 86.3 328 28.4
MCO04G021 Micromonas commoda HOM05D005315 ORTHO05D006589 9.7e-15 85.9 324 29.3
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 9.7e-15 85.9 338 26.9
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 9.7e-15 85.9 338 26.3
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 9.7e-15 85.9 337 27.6
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 1.3e-14 85.5 339 27.4
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 1.6e-14 85.1 357 25.8
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 1.6e-14 85.1 338 26.9
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 1.6e-14 85.1 339 25.4
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 2.2e-14 84.7 334 27.5
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 2.2e-14 84.7 363 27.8
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 2.8e-14 84.3 338 26.3
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 4.8e-14 83.6 367 26.2
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 4.8e-14 83.6 341 27.0
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 4.8e-14 83.6 362 28.2
Gohir.D12G008800 Gossypium hirsutum HOM05D005315 ORTHO05D006589 6.3e-14 83.2 294 28.6
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 6.3e-14 83.2 342 27.5
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 8.2e-14 82.8 340 26.5
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 1.1e-13 82.4 338 26.0
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 1.1e-13 82.4 357 25.5
MBI02_g41662_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 1.4e-13 82.0 225 31.1
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 1.8e-13 81.6 326 25.8
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 2.4e-13 81.3 333 25.2
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 2.4e-13 81.3 333 27.0
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 3.1e-13 80.9 338 26.0
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 3.1e-13 80.9 338 26.0
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 3.1e-13 80.9 329 28.9
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 3.1e-13 80.9 331 26.6
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 5.3e-13 80.1 159 31.4
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 5.3e-13 80.1 348 26.1
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 6.9e-13 79.7 339 27.1
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 6.9e-13 79.7 341 27.0
Cre01.g028550 Chlamydomonas reinhardtii HOM05D005315 ORTHO05D006589 9.0e-13 79.3 329 29.2
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 9.0e-13 79.3 337 24.9
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 1.2e-12 79.0 154 32.5
Os04g0619500 Oryza sativa ssp. japonica HOM05D005315 ORTHO05D006589 1.2e-12 79.0 336 26.2
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 1.5e-12 78.6 338 26.3
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 1.5e-12 78.6 340 26.5
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 1.5e-12 78.6 338 25.7
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 1.5e-12 78.6 343 26.5
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 1.5e-12 78.6 332 26.5
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 1.5e-12 78.6 319 27.6
ECA247G4081 Erigeron canadensis HOM05D005315 ORTHO05D006589 3.4e-12 77.4 338 25.4
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 1.0e-11 75.9 340 26.8
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 1.7e-11 75.1 338 25.4
Hma1.2p1_0209F.1_g088950 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 2.9e-11 74.3 327 25.7
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 2.9e-11 74.3 322 27.0
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 6.5e-11 73.2 338 26.6
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 6.5e-11 73.2 338 26.6
Nn1g09463 Nelumbo nucifera HOM05D005315 ORTHO05D006589 6.5e-11 73.2 224 27.7
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 1.4e-10 72.0 341 26.4
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 3.2e-10 70.9 326 25.5
ECA234G3298 Erigeron canadensis HOM05D005315 ORTHO05D006589 3.2e-10 70.9 338 24.6
Ah.12g052040 Amaranthus hybridus HOM05D005315 ORTHO05D006589 9.4e-10 69.3 259 26.3
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 3.6e-09 67.4 346 24.6
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 1.4e-08 65.5 345 23.5
AagrBONN_evm.TU.Sc2ySwM_368.596 Anthoceros agrestis HOM05D006446 ORTHO05D007832 1.8e-08 65.1 131 30.5
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.9e-08 63.9 142 31.7
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 2.0e-07 61.6 317 24.6
THA.LOC104827244 Tarenaya hassleriana HOM05D006446 ORTHO05D007832 1.7e-06 58.5 139 31.7
HanXRQChr16g0511311 Helianthus annuus HOM05D005315 ORTHO05D006589 2.2e-06 58.2 204 27.9
Cfa004041 Carpinus fangiana HOM05D006446 ORTHO05D007832 6.3e-06 56.6 139 30.9
CiPaw.01G015300 Carya illinoinensis HOM05D006446 ORTHO05D007832 6.3e-06 56.6 139 30.9
Haze_15372 Corylus avellana HOM05D006446 ORTHO05D007832 6.3e-06 56.6 139 30.9
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 6.3e-06 56.6 337 24.6


User provided reference genes

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