Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 0.0e+00 3905.1 1972 100.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.4e-48 200.3 866 24.7
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.0e-46 194.1 901 23.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.4e-43 183.7 808 24.8
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 2.0e-42 179.9 821 25.0
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 3.3e-42 179.1 821 25.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 3.3e-42 179.1 920 24.2
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 3.3e-42 179.1 952 24.4
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 5.7e-42 178.3 887 24.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 1.3e-41 177.2 888 24.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.2e-41 176.4 727 23.9
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 2.2e-41 176.4 924 23.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 2.8e-41 176.0 898 24.3
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 3.7e-41 175.6 953 24.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 3.7e-41 175.6 871 23.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 4.8e-41 175.3 896 24.3
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 6.3e-41 174.9 630 26.5
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 1.1e-40 174.1 780 26.4
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 2.4e-40 172.9 779 25.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 3.1e-40 172.6 769 24.4
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 4.1e-40 172.2 947 23.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 7.0e-40 171.4 813 24.7
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 7.0e-40 171.4 815 24.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 9.1e-40 171.0 780 26.2
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 1.2e-39 170.6 779 24.0
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 1.6e-39 170.2 877 23.9
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.6e-39 170.2 772 24.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 1.6e-39 170.2 893 24.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 2.7e-39 169.5 934 23.8
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 2.7e-39 169.5 947 25.0
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 3.5e-39 169.1 967 24.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 4.5e-39 168.7 838 23.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 5.9e-39 168.3 850 23.9
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 5.9e-39 168.3 799 25.7
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 5.9e-39 168.3 809 23.2
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 5.9e-39 168.3 777 24.1
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 5.9e-39 168.3 816 24.9
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 5.9e-39 168.3 927 24.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.7e-39 167.9 777 24.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 1.0e-38 167.5 829 23.8
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.0e-38 167.5 838 23.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 1.3e-38 167.2 792 24.7
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.7e-38 166.8 917 23.2
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 2.2e-38 166.4 785 23.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 2.9e-38 166.0 834 23.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 2.9e-38 166.0 766 24.4
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 3.8e-38 165.6 817 24.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 5.0e-38 165.2 842 23.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 8.5e-38 164.5 852 22.3
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 8.5e-38 164.5 874 23.0
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 8.5e-38 164.5 841 23.3
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 1.1e-37 164.1 779 23.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 1.5e-37 163.7 815 24.3
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 1.5e-37 163.7 794 24.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.9e-37 163.3 784 23.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 2.5e-37 162.9 890 23.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 2.5e-37 162.9 946 24.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 3.2e-37 162.5 938 23.2
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 3.2e-37 162.5 783 24.4
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 3.2e-37 162.5 966 23.6
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 3.2e-37 162.5 808 25.0
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 4.2e-37 162.2 956 22.9
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 4.2e-37 162.2 796 24.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 7.2e-37 161.4 936 23.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.2e-37 161.4 812 23.3
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 7.2e-37 161.4 797 24.1
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 9.4e-37 161.0 785 24.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 9.4e-37 161.0 901 24.1
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 9.4e-37 161.0 945 23.6
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 9.4e-37 161.0 800 24.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 1.2e-36 160.6 808 23.4
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 1.2e-36 160.6 800 24.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 2.1e-36 159.8 928 23.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 2.1e-36 159.8 928 23.2
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 2.1e-36 159.8 791 25.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 2.1e-36 159.8 791 23.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 4.7e-36 158.7 763 24.4
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 4.7e-36 158.7 841 23.5
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.7e-36 158.7 946 23.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 6.1e-36 158.3 836 23.8
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 6.1e-36 158.3 786 23.8
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 8.0e-36 157.9 780 23.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 8.0e-36 157.9 786 23.3
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 8.0e-36 157.9 816 23.3
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 8.0e-36 157.9 798 24.3
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.0e-36 157.9 775 25.5
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 8.0e-36 157.9 776 23.7
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 1.0e-35 157.5 783 24.3
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 1.0e-35 157.5 803 24.3
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 1.0e-35 157.5 732 24.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 1.4e-35 157.1 887 22.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 2.3e-35 156.4 847 23.6
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.3e-35 156.4 797 22.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 3.0e-35 156.0 787 23.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 4.0e-35 155.6 772 23.8
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 4.0e-35 155.6 758 23.5
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 5.2e-35 155.2 796 23.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 5.2e-35 155.2 797 24.6
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 5.2e-35 155.2 783 23.6
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 6.8e-35 154.8 833 23.6
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 6.8e-35 154.8 948 23.3
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 8.8e-35 154.5 791 24.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 8.8e-35 154.5 829 24.5
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 1.2e-34 154.1 829 22.2
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 1.5e-34 153.7 765 24.3
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 2.6e-34 152.9 779 23.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 2.6e-34 152.9 774 23.8
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 3.4e-34 152.5 887 22.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 7.5e-34 151.4 822 24.2
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 7.5e-34 151.4 747 24.9
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 9.8e-34 151.0 823 23.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 9.8e-34 151.0 799 22.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 3.7e-33 149.1 684 23.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.8e-33 148.7 765 23.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 8.3e-33 147.9 774 24.2
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 8.3e-33 147.9 782 23.5
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.1e-32 147.5 865 22.7
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.1e-32 147.5 727 24.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.4e-32 146.4 714 24.4
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 5.4e-32 145.2 816 23.2
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 3.5e-31 142.5 700 24.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 5.9e-31 141.7 917 22.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 5.0e-30 138.7 799 23.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 4.2e-29 135.6 616 23.5
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 9.5e-29 134.4 633 24.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.1e-28 133.3 908 21.1
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 3.6e-28 132.5 918 22.4
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 3.0e-27 129.4 700 24.9
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 6.8e-27 128.3 790 22.8
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.8e-26 124.4 519 24.1
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.7e-25 123.6 656 22.1
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.2e-25 123.2 708 22.7
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.2e-23 117.5 513 24.2
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 5.6e-13 82.0 271 27.3
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.0e-12 78.2 270 27.8
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.4e-08 67.4 213 27.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 4.1e-08 65.9 459 23.3


User provided reference genes

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