Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 0.0e+00 1099.3 556 100.0
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.4e-25 122.1 511 26.0
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 4.4e-24 117.1 490 25.9
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.7e-24 116.7 468 26.9
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 9.7e-24 115.9 472 26.9
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 4.8e-23 113.6 472 26.7
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.8e-22 111.7 510 25.7
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 3.1e-22 110.9 478 25.7
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 7.7e-21 106.3 494 26.3
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 2.2e-20 104.8 509 24.8
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 9.4e-19 99.4 506 25.1
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 1.2e-18 99.0 566 24.4
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 1.4e-17 95.5 193 32.6
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 1.4e-17 95.5 193 32.6
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.8e-17 95.1 190 34.2
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 2.3e-17 94.7 190 34.2
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 2.3e-17 94.7 514 24.3
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 3.0e-17 94.4 504 23.2
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 5.2e-17 93.6 187 33.2
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 5.2e-17 93.6 193 32.6
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 5.2e-17 93.6 148 36.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.2e-16 92.4 200 32.5
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.5e-16 92.0 146 37.0
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 2.6e-16 91.3 158 36.1
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 2.6e-16 91.3 192 33.3
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 3.3e-16 90.9 159 35.2
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 3.3e-16 90.9 197 32.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.3e-16 90.9 159 35.8
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 4.4e-16 90.5 187 32.6
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 4.4e-16 90.5 191 33.0
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 4.4e-16 90.5 149 36.2
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 5.7e-16 90.1 173 34.7
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.7e-16 90.1 173 34.7
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.7e-16 90.1 173 34.7
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 5.7e-16 90.1 184 32.6
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 5.7e-16 90.1 180 33.9
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 5.7e-16 90.1 251 30.7
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.5e-16 89.7 173 34.7
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.5e-16 89.7 173 34.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.5e-16 89.7 173 34.7
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 7.5e-16 89.7 158 36.1
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 7.5e-16 89.7 180 33.9
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 7.5e-16 89.7 563 24.0
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.5e-16 89.7 148 36.5
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 9.7e-16 89.4 185 32.4
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 9.7e-16 89.4 186 37.6
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.3e-15 89.0 190 33.2
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.3e-15 89.0 178 33.7
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.3e-15 89.0 184 32.6
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.3e-15 89.0 248 31.5
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.7e-15 88.6 180 32.2
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.7e-15 88.6 200 31.5
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.7e-15 88.6 173 32.4
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.2e-15 88.2 199 32.2
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.2e-15 88.2 180 33.9
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.2e-15 88.2 197 32.0
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 2.2e-15 88.2 206 33.0
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.2e-15 88.2 180 33.9
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 2.8e-15 87.8 187 32.6
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 2.8e-15 87.8 204 32.8
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 2.8e-15 87.8 180 33.3
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.8e-15 87.8 187 32.6
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.8e-15 87.8 187 32.6
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 2.8e-15 87.8 187 32.6
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.8e-15 87.8 173 34.1
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.8e-15 87.8 180 33.3
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.8e-15 87.8 160 35.0
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 3.7e-15 87.4 197 32.0
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 3.7e-15 87.4 199 30.7
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 3.7e-15 87.4 218 29.8
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 3.7e-15 87.4 237 31.2
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 4.8e-15 87.0 532 26.5
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 4.8e-15 87.0 193 32.6
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 4.8e-15 87.0 180 33.3
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 4.8e-15 87.0 179 33.5
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 6.3e-15 86.7 211 32.7
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 6.3e-15 86.7 180 32.8
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 6.3e-15 86.7 158 34.8
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 6.3e-15 86.7 207 30.4
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 6.3e-15 86.7 149 34.2
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 6.3e-15 86.7 192 32.8
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 8.2e-15 86.3 202 31.7
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.2e-15 86.3 178 33.1
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 8.2e-15 86.3 175 33.7
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 8.2e-15 86.3 137 36.5
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 8.2e-15 86.3 158 34.2
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.1e-14 85.9 158 34.2
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.1e-14 85.9 190 32.1
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.1e-14 85.9 177 32.2
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 1.1e-14 85.9 180 32.8
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.1e-14 85.9 190 33.7
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.1e-14 85.9 184 32.1
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.1e-14 85.9 148 34.5
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.4e-14 85.5 232 31.5
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.4e-14 85.5 180 32.8
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.4e-14 85.5 185 32.4
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.4e-14 85.5 177 32.2
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.4e-14 85.5 148 36.5
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.8e-14 85.1 196 33.2
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.8e-14 85.1 200 31.0
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.8e-14 85.1 200 31.0
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.8e-14 85.1 158 34.2
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.4e-14 84.7 190 31.6
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 3.1e-14 84.3 182 33.0
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 4.1e-14 84.0 211 32.2
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 4.1e-14 84.0 145 35.9
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.1e-14 84.0 158 33.5
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.1e-14 84.0 158 33.5
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 5.3e-14 83.6 177 32.8
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 7.0e-14 83.2 196 31.6
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 7.0e-14 83.2 187 31.0
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 9.1e-14 82.8 193 31.1
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 9.1e-14 82.8 177 32.8
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.0e-13 81.6 196 31.6
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.7e-13 81.3 106 37.7
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 3.5e-13 80.9 194 30.9
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 4.5e-13 80.5 187 31.0
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 4.5e-13 80.5 176 33.0
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.8e-12 77.4 145 34.5
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 5.0e-12 77.0 181 31.5
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.9e-11 75.1 197 28.4
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 2.0e-08 65.1 556 23.6
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.7e-07 62.0 187 27.8
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 7.0e-06 56.6 447 22.4


User provided reference genes

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