Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025316 Carpinus fangiana HOM05D004428 ORTHO05D006381 0.0e+00 1639.8 835 100.0
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 1.4e-71 275.4 865 28.0
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 5.1e-69 266.9 861 27.9
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.6e-67 261.9 849 26.6
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 4.1e-66 257.3 849 26.5
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 4.1e-66 257.3 776 28.7
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 4.1e-66 257.3 855 27.4
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 9.0e-66 256.1 857 27.3
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 9.0e-66 256.1 853 28.0
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 1.2e-65 255.8 836 28.3
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.0e-65 255.0 852 26.8
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 3.4e-65 254.2 845 27.1
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 4.5e-65 253.8 830 27.7
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 4.5e-65 253.8 847 26.9
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.2e-64 251.5 849 25.9
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 6.5e-64 250.0 827 27.0
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 6.5e-64 250.0 850 26.6
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 8.5e-64 249.6 858 26.7
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 8.5e-64 249.6 853 26.1
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 1.1e-63 249.2 836 26.8
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.1e-63 249.2 851 27.4
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 1.4e-63 248.8 701 28.2
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.4e-63 248.8 840 26.9
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 1.9e-63 248.4 852 27.5
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 2.5e-63 248.1 833 27.3
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 3.2e-63 247.7 838 27.2
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 3.2e-63 247.7 848 26.2
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 3.2e-63 247.7 857 26.3
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 3.2e-63 247.7 848 27.2
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 4.2e-63 247.3 848 27.2
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 4.2e-63 247.3 850 26.4
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 5.5e-63 246.9 711 27.8
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 5.5e-63 246.9 857 27.7
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 7.2e-63 246.5 844 26.5
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 9.4e-63 246.1 834 26.7
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 9.4e-63 246.1 846 27.1
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 1.2e-62 245.7 841 27.3
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 1.2e-62 245.7 852 27.1
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 1.6e-62 245.4 852 25.9
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 1.6e-62 245.4 839 26.5
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 2.1e-62 245.0 848 27.2
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 2.7e-62 244.6 836 26.8
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 3.6e-62 244.2 861 26.9
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 4.6e-62 243.8 855 26.9
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 6.1e-62 243.4 853 26.8
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 7.9e-62 243.0 846 26.6
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 7.9e-62 243.0 847 26.3
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 7.9e-62 243.0 704 27.4
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 7.9e-62 243.0 837 26.0
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 1.0e-61 242.7 849 26.6
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 1.4e-61 242.3 832 26.1
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 1.8e-61 241.9 836 26.8
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.8e-61 241.9 847 26.6
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 1.8e-61 241.9 845 26.9
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 2.3e-61 241.5 852 27.1
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 2.3e-61 241.5 839 26.9
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 3.0e-61 241.1 851 26.3
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 3.0e-61 241.1 842 25.8
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 3.0e-61 241.1 843 26.9
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 3.9e-61 240.7 853 26.7
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 6.7e-61 240.0 833 26.2
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 6.7e-61 240.0 706 27.2
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 8.8e-61 239.6 833 26.2
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 8.8e-61 239.6 748 26.2
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.5e-60 238.8 862 25.8
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 1.5e-60 238.8 865 27.2
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 1.5e-60 238.8 857 26.7
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 2.0e-60 238.4 851 26.3
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 2.5e-60 238.0 853 27.3
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 3.3e-60 237.7 847 26.4
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 4.3e-60 237.3 850 26.8
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 5.7e-60 236.9 845 27.3
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 7.4e-60 236.5 836 25.6
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 7.4e-60 236.5 847 26.1
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 9.7e-60 236.1 861 25.9
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 2.2e-59 235.0 839 27.1
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 4.8e-59 233.8 841 25.8
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 6.3e-59 233.4 850 25.8
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 1.1e-58 232.6 859 26.2
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 1.1e-58 232.6 847 26.4
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 1.8e-58 231.9 835 25.7
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 1.8e-58 231.9 866 27.6
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 2.4e-58 231.5 711 26.6
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 2.4e-58 231.5 852 26.5
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 3.1e-58 231.1 843 26.5
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 4.1e-58 230.7 853 25.8
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 4.1e-58 230.7 835 25.7
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 5.3e-58 230.3 848 25.6
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 5.3e-58 230.3 853 25.6
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 5.3e-58 230.3 838 24.9
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 5.3e-58 230.3 854 26.0
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 6.9e-58 229.9 841 26.3
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 6.9e-58 229.9 846 26.1
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 9.1e-58 229.6 871 24.9
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 9.1e-58 229.6 839 25.4
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 2.6e-57 228.0 819 27.0
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 2.6e-57 228.0 845 26.4
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 2.6e-57 228.0 838 25.7
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 7.7e-57 226.5 849 26.4
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 7.7e-57 226.5 835 25.1
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.3e-56 225.7 845 26.2
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 1.3e-56 225.7 846 26.0
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 2.2e-56 224.9 854 25.8
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 3.8e-56 224.2 880 25.8
PRCOL_00005736 Prasinoderma coloniale HOM05D004428 ORTHO05D006381 3.8e-56 224.2 771 26.7
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 8.5e-56 223.0 843 25.5
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.1e-55 222.6 825 25.2
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 1.4e-55 222.2 672 27.2
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 7.2e-55 219.9 834 25.9
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 1.0e-53 216.1 766 25.3
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 1.8e-53 215.3 562 29.5
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 3.9e-53 214.2 898 24.6
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.5e-52 212.2 898 24.4
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 2.0e-52 211.8 853 23.9
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 3.3e-52 211.1 935 25.8
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 1.7e-51 208.8 851 25.6
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 7.0e-50 203.4 654 27.7
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 6.5e-48 196.8 346 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 9.4e-47 193.0 829 25.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.7e-46 191.4 563 27.2
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 2.3e-45 188.3 837 24.7
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 9.7e-44 183.0 640 23.9
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 3.7e-43 181.0 779 26.1
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 1.2e-41 176.0 593 25.5
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 4.5e-41 174.1 771 24.3
PSO339G3255 Papaver somniferum HOM05D004428 ORTHO05D006381 5.9e-41 173.7 359 32.6
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 4.7e-38 164.1 855 23.4
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 6.8e-37 160.2 785 24.6
Haze_22769 Corylus avellana HOM05D004428 ORTHO05D006381 8.3e-35 153.3 321 30.5
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 4.1e-34 151.0 315 32.4
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 3.6e-30 137.9 786 23.3
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 8.0e-30 136.7 785 23.4
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 8.0e-30 136.7 317 30.3
COL.COLO4_23022 Corchorus olitorius HOM05D004428 ORTHO05D006381 5.7e-28 130.6 328 29.9
BcaB04g17056 Brassica carinata HOM05D004428 ORTHO05D006381 9.5e-23 113.2 357 26.6
Glyma.20G030400 Glycine max HOM05D004428 ORTHO05D035991 4.9e-19 100.9 182 33.0
CDE05G2001 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 5.9e-17 94.0 697 21.2
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 2.9e-16 91.7 609 22.3
Oeu007483.1 Olea europaea HOM05D004428 ORTHO05D006381 5.4e-10 70.9 61 49.2
SMO358G0014 Selaginella moellendorffii HOM05D002230 ORTHO05D002441 7.8e-09 67.0 261 22.6
Mapoly0040s0120 Marchantia polymorpha HOM05D002230 ORTHO05D002441 1.7e-08 65.9 284 24.6
PRCOL_00006812 Prasinoderma coloniale HOM05D002230 ORTHO05D002441 3.0e-08 65.1 191 24.6
CANSAT56G1871 Cannabis sativa HOM05D004428 ORTHO05D006381 6.6e-08 63.9 313 21.4
SEGI_31495 Sequoiadendron giganteum HOM05D002230 ORTHO05D002441 8.6e-08 63.5 261 22.2
PSO173G0025 Papaver somniferum HOM05D002230 ORTHO05D002441 1.1e-07 63.2 239 22.6
PSO173G0158 Papaver somniferum HOM05D002230 ORTHO05D002441 1.1e-07 63.2 239 22.6
PSO421G0277 Papaver somniferum HOM05D002230 ORTHO05D002441 1.5e-07 62.8 261 23.0


User provided reference genes

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