Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 0.0e+00 2766.1 1505 100.0
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.3e-91 342.0 608 35.7
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.9e-91 341.7 617 35.8
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 3.9e-91 341.3 615 36.4
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 3.9e-91 341.3 611 35.7
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.1e-90 339.7 617 36.0
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 1.9e-90 339.0 613 35.7
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.6e-89 335.9 616 35.6
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.6e-89 335.9 621 36.1
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.8e-89 335.1 614 36.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 3.6e-89 334.7 618 36.1
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 4.7e-89 334.3 618 35.9
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 8.0e-89 333.6 616 36.2
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 1.4e-88 332.8 614 36.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 6.8e-88 330.5 610 35.9
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.5e-87 329.3 613 35.1
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.5e-87 327.0 624 34.8
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 7.5e-87 327.0 616 35.9
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 9.8e-87 326.6 621 34.1
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 9.8e-87 326.6 618 35.6
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 2.2e-86 325.5 615 34.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 3.7e-86 324.7 613 35.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 4.9e-86 324.3 621 34.9
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.1e-85 323.2 649 34.5
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 1.1e-85 323.2 778 34.6
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.1e-85 323.2 610 35.7
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.4e-85 322.8 611 35.5
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.4e-85 322.8 611 35.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.9e-85 322.4 607 34.9
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.1e-85 321.2 618 35.0
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 5.4e-85 320.9 623 36.6
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 5.4e-85 320.9 616 34.6
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 7.0e-85 320.5 617 36.1
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.2e-84 319.7 781 32.1
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.0e-84 318.9 620 34.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.7e-84 318.5 758 33.0
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.6e-84 317.8 611 35.0
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.3e-83 315.5 616 35.2
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.0e-83 315.1 772 31.6
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 5.0e-83 314.3 616 34.7
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 6.6e-83 313.9 791 34.0
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.5e-82 312.8 620 33.1
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.5e-82 312.8 538 37.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 4.3e-82 311.2 609 36.6
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.6e-82 310.8 616 33.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 9.5e-82 310.1 791 34.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 9.5e-82 310.1 620 33.7
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.6e-81 309.3 618 34.5
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 6.2e-81 307.4 646 34.1
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.8e-80 305.8 608 34.7
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.8e-80 305.8 608 34.7
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.8e-80 305.8 774 30.7
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.1e-80 305.1 610 34.1
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 3.1e-80 305.1 607 32.9
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 3.1e-80 305.1 613 33.4
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 5.2e-80 304.3 620 32.7
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 5.2e-80 304.3 607 32.8
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 6.8e-80 303.9 645 33.6
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.2e-79 303.1 648 32.1
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.2e-79 303.1 608 34.0
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.0e-79 302.4 567 35.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.6e-79 302.0 629 33.4
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 4.4e-79 301.2 608 33.7
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 4.4e-79 301.2 618 33.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 7.5e-79 300.4 646 34.4
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.3e-78 299.7 636 32.9
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 3.7e-78 298.1 608 33.1
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 4.9e-78 297.7 611 33.7
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 6.4e-78 297.4 625 33.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 8.3e-78 297.0 531 35.0
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.1e-77 296.6 649 32.7
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 1.4e-77 296.2 626 33.1
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 3.2e-77 295.0 629 34.5
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 4.1e-77 294.7 761 32.9
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 4.1e-77 294.7 615 32.7
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 4.1e-77 294.7 623 33.2
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 5.4e-77 294.3 607 33.6
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 7.1e-77 293.9 619 33.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.6e-76 292.7 500 36.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 2.1e-76 292.4 629 34.3
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.1e-76 292.4 629 34.3
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 2.1e-76 292.4 629 33.7
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.1e-76 292.4 683 31.2
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 2.7e-76 292.0 629 33.7
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 3.5e-76 291.6 641 32.8
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 4.6e-76 291.2 626 33.4
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 6.0e-76 290.8 624 32.4
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 7.8e-76 290.4 639 32.2
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 7.8e-76 290.4 639 32.2
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.0e-75 290.0 620 33.2
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.1e-75 287.7 614 32.2
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-74 285.8 643 32.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.2e-73 283.1 643 32.3
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 2.1e-73 282.3 776 30.0
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.8e-72 277.3 787 30.1
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.5e-71 276.2 469 35.4
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 7.6e-71 273.9 672 31.5
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.3e-70 273.1 672 31.5
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.9e-70 271.9 668 31.4
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.9e-70 271.9 616 32.6
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 6.4e-70 270.8 629 32.8
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 6.4e-70 270.8 785 30.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 2.3e-67 262.3 607 32.9
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 1.6e-65 256.1 489 32.9
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.3e-54 219.9 648 28.1
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.3e-54 219.9 935 24.2
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 5.3e-48 198.0 466 33.0
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.5e-47 196.4 473 32.8
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 7.6e-47 194.1 427 32.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 8.4e-46 190.7 763 24.6
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.0e-43 183.7 347 35.4
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.8e-41 175.6 347 34.0
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 8.1e-41 174.1 613 28.9
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.1e-40 173.7 354 31.9
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 4.6e-36 158.3 478 25.5
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 8.4e-30 137.5 319 34.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-29 135.6 347 31.1
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.0e-27 129.0 246 35.8
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.2e-25 120.9 358 30.2
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-24 120.2 264 33.0
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 6.9e-24 117.9 172 36.6
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 2.2e-22 112.8 140 42.9
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.4e-21 110.2 316 28.8
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 2.0e-18 99.8 142 34.5
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 4.3e-18 98.6 405 28.1
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 4.3e-18 98.6 220 30.9
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 1.3e-17 97.1 260 29.2
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-16 92.4 104 46.2
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-16 92.4 104 46.2
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-16 92.4 104 46.2
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 7.7e-15 87.8 119 38.7
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.3e-14 87.0 104 38.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.2e-14 86.3 99 45.5
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 2.9e-14 85.9 111 38.7
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 5.0e-14 85.1 117 41.0
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-13 84.0 117 40.2
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.0e-11 75.9 97 45.4
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 6.3e-09 68.2 90 37.8
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 6.3e-09 68.2 113 31.0
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.3e-09 68.2 91 39.6
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 2.4e-08 66.2 106 36.8
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.5e-07 63.5 269 26.8


User provided reference genes

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