Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 0.0e+00 1526.9 809 100.0
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 3.2e-68 264.2 305 46.6
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.4e-66 258.8 305 46.2
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 5.1e-66 256.9 306 44.4
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 6.7e-66 256.5 331 43.8
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 8.8e-66 256.1 307 45.0
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.3e-64 252.3 306 47.4
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.7e-64 251.9 301 45.5
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.7e-64 251.9 306 44.1
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.2e-64 251.5 306 43.8
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.2e-64 251.5 306 44.8
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 2.8e-64 251.1 323 43.7
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 3.7e-64 250.8 300 45.3
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 3.7e-64 250.8 312 44.2
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 4.8e-64 250.4 306 44.1
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 4.8e-64 250.4 315 43.8
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 6.3e-64 250.0 306 45.1
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 8.2e-64 249.6 306 43.5
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 8.2e-64 249.6 305 43.9
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 8.2e-64 249.6 306 45.4
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.1e-63 249.2 320 43.1
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 1.4e-63 248.8 323 43.0
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.8e-63 248.4 311 44.7
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 4.1e-63 247.3 312 44.2
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 5.3e-63 246.9 306 43.5
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 9.1e-63 246.1 306 44.1
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.2e-62 245.7 330 41.8
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.2e-62 245.7 310 43.9
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.5e-62 245.4 309 42.4
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.5e-62 245.4 331 42.3
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.5e-62 245.4 306 42.8
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 2.0e-62 245.0 317 42.0
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.4e-62 244.2 311 44.1
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 3.4e-62 244.2 306 43.8
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 4.5e-62 243.8 311 43.4
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 4.5e-62 243.8 306 43.8
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 5.9e-62 243.4 311 43.4
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 7.7e-62 243.0 282 45.7
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 7.7e-62 243.0 311 43.1
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.0e-61 242.7 306 44.8
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.0e-61 242.7 311 43.4
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.0e-61 242.7 306 43.1
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 1.7e-61 241.9 320 43.4
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 1.7e-61 241.9 310 43.5
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 2.2e-61 241.5 311 42.4
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.8e-61 240.7 328 42.1
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 3.8e-61 240.7 305 43.0
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 8.5e-61 239.6 306 42.5
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 8.5e-61 239.6 306 43.1
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.1e-60 239.2 306 44.1
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.1e-60 239.2 326 41.7
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-60 238.8 318 41.8
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.4e-60 238.8 306 42.8
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.9e-60 238.4 299 44.5
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.9e-60 238.4 306 43.5
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.5e-60 238.0 311 42.1
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 2.5e-60 238.0 301 42.9
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 4.2e-60 237.3 306 42.2
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 5.5e-60 236.9 360 39.7
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 7.2e-60 236.5 333 41.7
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 7.2e-60 236.5 327 43.1
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 9.4e-60 236.1 306 41.8
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 9.4e-60 236.1 308 41.6
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 1.2e-59 235.7 306 41.8
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.2e-59 235.7 306 42.5
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.2e-59 235.7 306 42.2
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 2.7e-59 234.6 306 41.8
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 2.7e-59 234.6 316 43.0
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 4.7e-59 233.8 303 43.6
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 4.7e-59 233.8 308 41.6
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 4.7e-59 233.8 308 41.6
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 4.7e-59 233.8 334 41.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 6.1e-59 233.4 308 41.6
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 6.1e-59 233.4 285 42.8
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.1e-59 233.4 282 44.7
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 6.1e-59 233.4 306 43.8
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 6.1e-59 233.4 301 43.2
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 7.9e-59 233.0 303 43.2
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 7.9e-59 233.0 306 41.5
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.4e-58 232.3 335 40.0
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 2.3e-58 231.5 306 41.2
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 3.9e-58 230.7 330 41.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 5.1e-58 230.3 306 42.2
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 8.8e-58 229.6 325 40.9
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.1e-57 229.2 291 44.3
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 3.3e-57 227.6 306 41.8
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 3.3e-57 227.6 303 42.2
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 9.7e-57 226.1 336 39.9
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 9.7e-57 226.1 285 43.5
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 6.3e-56 223.4 294 40.5
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 8.2e-56 223.0 289 43.3
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 8.2e-56 223.0 310 41.9
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.1e-55 222.6 292 40.8
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.6e-54 218.0 278 43.9
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 7.7e-54 216.5 306 41.2
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-53 216.1 306 41.2
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-53 216.1 306 40.8
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.3e-53 215.7 285 42.1
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.7e-53 215.3 306 40.5
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 4.2e-52 210.7 267 42.3
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 4.2e-52 210.7 375 36.0
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 5.5e-52 210.3 336 36.6
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 9.4e-52 209.5 272 44.9
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.4e-50 205.7 294 40.5
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 2.2e-48 198.4 270 41.5
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 3.7e-48 197.6 201 49.8
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 6.3e-48 196.8 252 42.9
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 3.1e-47 194.5 215 46.5
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.2e-46 192.6 279 40.1
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 3.5e-46 191.0 202 47.0
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.3e-45 189.1 248 44.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 6.8e-42 176.8 308 35.7
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 6.3e-40 170.2 254 41.3
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.1e-39 169.5 210 45.2
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.1e-39 167.9 208 45.7
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 5.3e-39 167.2 170 48.8
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 9.1e-39 166.4 234 42.7
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 1.5e-33 149.1 181 44.8
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.3e-26 125.2 174 43.1
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 6.1e-19 100.5 134 39.6
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 8.9e-18 96.7 113 42.5
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 4.7e-11 74.3 85 42.4
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.0e-10 71.2 118 40.7
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.0e-09 68.9 70 45.7
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 2.0e-09 68.9 99 39.4
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.7e-08 65.9 68 51.5
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.3e-08 63.5 68 50.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.1e-07 63.2 68 47.1
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.2e-07 61.6 47 63.8
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.4e-07 60.8 68 47.1
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 7.1e-07 60.5 83 36.1
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 2.7e-06 58.5 51 56.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.7e-06 58.5 62 50.0
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 7.8e-06 57.0 105 32.4


User provided reference genes

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