Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 0.0e+00 1591.2 854 100.0
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 2.1e-25 122.1 275 37.5
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.8e-24 119.0 237 38.0
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.1e-24 117.5 273 34.4
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.0e-23 115.5 256 35.2
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 3.3e-23 114.8 284 32.7
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 3.3e-23 114.8 295 33.2
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 9.7e-23 113.2 297 33.3
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.3e-22 112.8 274 35.0
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.7e-22 112.5 274 34.3
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.7e-22 112.5 283 34.3
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 2.2e-22 112.1 289 32.5
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 2.8e-22 111.7 276 34.1
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.7e-22 111.3 277 33.6
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 6.3e-22 110.5 274 34.3
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 6.3e-22 110.5 287 33.1
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.3e-22 110.5 248 32.7
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 6.3e-22 110.5 239 35.6
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 8.2e-22 110.2 285 32.3
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 8.2e-22 110.2 261 34.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.4e-21 109.4 289 31.1
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.8e-21 109.0 277 34.7
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.8e-21 109.0 295 32.9
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 3.1e-21 108.2 281 32.4
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.1e-21 108.2 248 32.3
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.1e-21 108.2 248 32.3
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 5.3e-21 107.5 270 33.3
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 6.9e-21 107.1 242 34.7
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 6.9e-21 107.1 268 34.0
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 6.9e-21 107.1 266 33.8
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 9.1e-21 106.7 274 33.6
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 9.1e-21 106.7 278 33.1
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 1.2e-20 106.3 304 31.2
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.5e-20 105.9 287 31.0
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 1.5e-20 105.9 301 33.9
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.5e-20 105.9 282 31.6
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.5e-20 105.9 281 32.4
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-20 105.5 251 33.5
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 2.0e-20 105.5 244 32.0
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 2.0e-20 105.5 269 34.6
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 2.6e-20 105.1 295 32.5
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 4.5e-20 104.4 280 34.3
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 5.9e-20 104.0 282 31.6
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 7.7e-20 103.6 285 31.2
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 7.7e-20 103.6 276 30.8
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 1.0e-19 103.2 285 33.7
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 1.3e-19 102.8 281 31.3
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.3e-19 102.8 262 34.0
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 1.3e-19 102.8 240 35.0
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 1.7e-19 102.4 229 33.2
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.7e-19 102.4 322 28.6
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.7e-19 102.4 299 35.1
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 2.2e-19 102.1 275 34.2
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 2.9e-19 101.7 278 30.9
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 2.9e-19 101.7 278 33.1
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 2.9e-19 101.7 141 44.0
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 5.0e-19 100.9 263 31.9
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 5.0e-19 100.9 233 36.1
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 5.0e-19 100.9 145 40.0
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.5e-19 100.1 290 29.7
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.1e-18 99.8 279 31.5
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 1.1e-18 99.8 233 35.2
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.1e-18 99.8 242 32.6
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-18 99.4 232 32.8
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.4e-18 99.4 298 31.9
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.9e-18 99.0 273 32.6
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 2.5e-18 98.6 236 33.5
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.5e-18 98.6 298 31.9
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.2e-18 98.2 259 29.7
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 4.2e-18 97.8 246 33.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 4.2e-18 97.8 274 32.5
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 9.4e-18 96.7 245 30.6
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 9.4e-18 96.7 298 32.9
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.6e-17 95.9 298 32.9
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 2.1e-17 95.5 283 31.1
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 2.1e-17 95.5 290 32.1
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 2.1e-17 95.5 303 30.4
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.7e-17 95.1 298 32.9
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 3.6e-17 94.7 308 28.6
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 3.6e-17 94.7 275 32.0
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 6.1e-17 94.0 273 32.2
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 7.9e-17 93.6 239 31.8
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 7.9e-17 93.6 291 31.3
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 7.9e-17 93.6 267 33.3
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.4e-16 92.8 285 29.8
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.4e-16 92.8 258 30.6
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-16 92.8 120 43.3
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 1.8e-16 92.4 263 31.6
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 1.8e-16 92.4 233 34.3
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 3.9e-16 91.3 246 28.5
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 5.1e-16 90.9 268 29.1
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 5.1e-16 90.9 157 37.6
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.1e-15 89.7 126 42.9
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.5e-15 89.4 294 33.0
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.5e-15 89.4 231 29.0
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 4.4e-15 87.8 228 32.9
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 9.7e-15 86.7 291 28.9
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 9.7e-15 86.7 137 40.1
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.2e-14 85.5 283 29.3
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 1.4e-13 82.8 136 38.2
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 9.1e-13 80.1 342 27.5
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.9e-10 72.4 284 29.6
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 5.5e-10 70.9 242 28.9
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 7.2e-10 70.5 109 39.4
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 6.1e-09 67.4 229 27.9
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 3.9e-08 64.7 110 37.3
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 6.7e-08 63.9 108 37.0
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 1.1e-07 63.2 60 51.7
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.5e-07 62.8 69 44.9
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 2.6e-07 62.0 260 26.2
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 9.7e-07 60.1 161 31.1
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 9.7e-07 60.1 56 48.2
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 1.3e-06 59.7 63 47.6
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.7e-06 59.3 200 30.0
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 1.7e-06 59.3 183 31.1
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.7e-06 59.3 60 48.3
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.2e-06 58.9 241 25.7
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 6.3e-06 57.4 183 30.6


User provided reference genes

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