Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1852.8 1085 100.0
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 2.8e-99 367.9 794 33.9
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 1.1e-98 365.9 796 34.2
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 3.1e-98 364.4 789 34.0
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.5e-97 362.1 773 33.9
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 2.2e-96 358.2 1184 28.7
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 2.2e-96 358.2 1177 29.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.4e-95 355.5 1199 28.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 9.2e-95 352.8 1129 29.6
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 6.0e-94 350.1 1131 29.3
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 7.8e-94 349.7 1138 29.3
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 7.8e-94 349.7 1157 29.2
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 7.8e-94 349.7 1165 29.3
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.3e-93 349.0 1155 29.6
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-93 349.0 1109 29.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 1.3e-93 349.0 1127 29.4
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 3.0e-93 347.8 1099 28.9
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 3.9e-93 347.4 1184 28.0
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 6.6e-93 346.7 785 33.4
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 8.6e-93 346.3 1130 29.6
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.5e-92 345.5 1147 28.8
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.5e-92 345.5 1088 28.4
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 2.5e-92 344.7 1179 28.4
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 5.6e-92 343.6 766 33.6
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-92 343.2 1164 28.4
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-92 343.2 1164 28.4
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 7.3e-92 343.2 804 32.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.5e-92 342.8 797 33.4
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 9.5e-92 342.8 1180 28.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 1.2e-91 342.4 1143 28.8
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 1.2e-91 342.4 1182 28.7
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 1.6e-91 342.0 1128 29.1
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 2.8e-91 341.3 1152 28.5
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 3.6e-91 340.9 1123 28.3
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 3.6e-91 340.9 1177 28.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 4.7e-91 340.5 1176 28.5
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 4.7e-91 340.5 1187 28.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 8.1e-91 339.7 1131 28.9
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 1.4e-90 339.0 1148 29.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 1.8e-90 338.6 777 33.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 1.8e-90 338.6 782 33.9
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 1.8e-90 338.6 1149 28.8
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 3.1e-90 337.8 1140 30.6
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 6.8e-90 336.7 1123 29.1
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 1.2e-89 335.9 1140 28.3
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 2.0e-89 335.1 1140 30.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 2.6e-89 334.7 1205 27.6
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 2.6e-89 334.7 1200 27.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 4.4e-89 334.0 1153 28.1
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 5.8e-89 333.6 1153 29.1
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 7.6e-89 333.2 1136 28.7
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 7.6e-89 333.2 1216 27.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 7.6e-89 333.2 1179 28.8
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 7.6e-89 333.2 1192 27.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 7.6e-89 333.2 788 33.0
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 9.9e-89 332.8 1150 30.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 9.9e-89 332.8 1153 29.1
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 9.9e-89 332.8 1228 28.5
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 1.3e-88 332.4 1141 30.6
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 2.9e-88 331.3 1141 30.2
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 2.9e-88 331.3 1173 27.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 4.9e-88 330.5 1216 27.5
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 1.1e-87 329.3 1181 28.4
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 1.1e-87 329.3 1193 27.5
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 1.4e-87 328.9 1157 28.3
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 2.4e-87 328.2 1192 27.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 2.4e-87 328.2 1174 28.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 4.1e-87 327.4 1146 30.6
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 4.1e-87 327.4 1200 27.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 4.1e-87 327.4 1149 28.2
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 5.4e-87 327.0 1172 28.0
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 9.2e-87 326.2 1180 27.7
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 1.6e-86 325.5 1145 30.2
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 4.6e-86 323.9 1187 27.3
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 7.8e-86 323.2 1170 28.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 1.7e-85 322.0 1191 28.3
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 1.7e-85 322.0 1188 27.5
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 3.0e-85 321.2 1149 29.9
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 3.0e-85 321.2 1155 28.7
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 5.1e-85 320.5 1221 27.6
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 5.1e-85 320.5 1200 27.6
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 8.6e-85 319.7 1174 27.9
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 3.3e-84 317.8 1180 27.5
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.6e-84 317.0 1200 27.6
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 5.6e-84 317.0 1132 28.9
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 4.7e-83 313.9 1113 27.2
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 6.2e-83 313.5 1181 27.2
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 8.1e-83 313.2 912 30.4
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 3.1e-82 311.2 1181 27.2
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 5.2e-82 310.5 1186 30.2
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 2.0e-81 308.5 1175 26.8
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 2.0e-81 308.5 1175 26.8
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 2.9e-80 304.7 1171 26.9
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 9.3e-79 299.7 1207 26.8
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 6.0e-78 297.0 1219 27.0
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 1.3e-75 289.3 1126 27.4
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.5e-73 282.3 570 36.3
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.2e-70 272.7 752 30.9
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 3.9e-69 267.7 617 32.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.0e-61 243.0 764 29.6
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.0e-61 241.5 636 32.1
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.9e-60 238.8 634 31.1
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 7.6e-57 226.9 366 39.3
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.3e-56 226.1 635 31.3
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 3.9e-53 214.5 561 31.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 6.9e-50 203.8 218 50.5
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.0e-45 189.9 579 30.6
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.0e-45 188.3 580 29.8
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 3.0e-37 161.8 564 27.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 4.4e-36 157.9 564 26.4
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.2e-35 155.6 267 37.8
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.0e-33 149.1 270 37.0
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.8e-27 127.9 396 29.5
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.2e-27 127.1 399 30.3
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.9e-23 115.9 362 30.1
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.2e-23 114.8 191 39.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.8e-21 109.4 459 26.4
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 5.2e-21 107.8 334 28.7
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.0e-20 105.9 163 38.7
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.2e-19 102.4 144 40.3
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 3.7e-19 101.7 215 33.0
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 4.8e-19 101.3 273 31.9
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-18 100.1 259 30.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.4e-18 99.0 133 42.1
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 9.1e-18 97.1 133 41.4
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.0e-17 95.9 133 41.4
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.9e-16 92.0 146 38.4
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.7e-14 84.7 483 24.6
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 1.0e-13 83.6 137 38.7
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.4e-12 78.6 93 45.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 3.4e-12 78.6 93 45.2
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.2e-11 75.9 93 44.1
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-10 73.2 93 43.0
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 4.1e-10 71.6 93 43.0
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.0e-08 64.7 106 35.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.6e-08 63.9 88 38.6
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-07 62.8 91 40.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.2e-06 60.1 120 33.3


User provided reference genes

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