Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 0.0e+00 3655.9 2242 100.0
MCO07G590 Micromonas commoda HOM05D065742 ORTHO05D034102 5.3e-36 158.7 329 35.0
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 5.5e-17 95.5 294 27.9
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 2.0e-11 77.0 203 28.1
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 5.9e-11 75.5 251 27.5
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 5.9e-11 75.5 192 29.7
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 5.9e-11 75.5 211 28.0
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 7.7e-11 75.1 208 28.4
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.0e-10 74.7 196 30.6
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 1.7e-10 73.9 194 29.4
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 1.7e-10 73.9 249 27.7
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 2.2e-10 73.6 191 30.4
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.2e-10 73.6 211 28.9
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.9e-10 73.2 191 30.4
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.9e-10 73.2 192 29.2
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 2.9e-10 73.2 202 26.7
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 2.9e-10 73.2 192 29.2
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 3.8e-10 72.8 192 30.2
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 3.8e-10 72.8 194 28.9
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 3.8e-10 72.8 194 29.4
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.8e-10 72.8 253 26.5
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 3.8e-10 72.8 253 26.5
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 3.8e-10 72.8 194 29.4
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 5.0e-10 72.4 192 29.7
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 5.0e-10 72.4 210 28.1
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 5.0e-10 72.4 192 29.7
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 6.5e-10 72.0 192 29.2
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 6.5e-10 72.0 247 26.3
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.5e-10 72.0 247 27.1
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 6.5e-10 72.0 191 29.3
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 8.5e-10 71.6 192 29.7
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 8.5e-10 71.6 193 28.5
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 8.5e-10 71.6 191 28.8
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 8.5e-10 71.6 190 28.4
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-09 71.2 247 27.1
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.1e-09 71.2 204 27.0
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 1.1e-09 71.2 210 28.1
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.4e-09 70.9 192 30.2
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.4e-09 70.9 234 26.5
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 1.4e-09 70.9 193 28.5
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.4e-09 70.9 191 29.3
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 1.4e-09 70.9 194 28.9
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.9e-09 70.5 249 27.7
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.9e-09 70.5 191 29.8
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.9e-09 70.5 191 28.8
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.9e-09 70.5 194 28.4
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.5e-09 70.1 266 25.6
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.5e-09 70.1 266 25.6
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 2.5e-09 70.1 212 28.3
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 2.5e-09 70.1 246 25.2
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.5e-09 70.1 191 28.8
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.5e-09 70.1 191 28.8
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.5e-09 70.1 191 28.8
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 2.5e-09 70.1 193 28.5
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.5e-09 70.1 249 27.7
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 3.2e-09 69.7 249 27.3
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 3.2e-09 69.7 191 28.8
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 3.2e-09 69.7 191 28.8
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 3.2e-09 69.7 249 27.3
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 3.2e-09 69.7 191 27.2
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.2e-09 69.7 191 28.8
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.2e-09 69.7 191 29.3
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 3.2e-09 69.7 208 27.9
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 3.2e-09 69.7 191 28.3
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 4.2e-09 69.3 197 29.9
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 4.2e-09 69.3 190 29.5
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 4.2e-09 69.3 248 26.6
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 4.2e-09 69.3 249 27.7
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 4.2e-09 69.3 219 24.7
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 4.2e-09 69.3 192 28.1
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 4.2e-09 69.3 190 27.4
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 5.5e-09 68.9 191 27.7
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 5.5e-09 68.9 191 27.7
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 5.5e-09 68.9 191 27.7
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 5.5e-09 68.9 251 26.7
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 5.5e-09 68.9 196 30.1
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 5.5e-09 68.9 189 29.1
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 7.2e-09 68.6 191 27.7
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 7.2e-09 68.6 192 29.2
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 7.2e-09 68.6 245 24.9
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 9.4e-09 68.2 191 28.8
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 9.4e-09 68.2 192 28.1
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 9.4e-09 68.2 245 25.3
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 9.4e-09 68.2 249 27.3
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 9.4e-09 68.2 202 29.2
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 9.4e-09 68.2 191 28.3
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 9.4e-09 68.2 209 27.3
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 9.4e-09 68.2 191 28.8
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.2e-08 67.8 191 29.8
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 1.2e-08 67.8 191 28.8
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 1.2e-08 67.8 192 29.2
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.6e-08 67.4 248 26.6
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.6e-08 67.4 216 26.9
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 1.6e-08 67.4 192 28.1
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.6e-08 67.4 190 27.9
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.6e-08 67.4 196 28.6
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.1e-08 67.0 247 27.1
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.1e-08 67.0 249 26.9
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 2.1e-08 67.0 249 26.9
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 2.1e-08 67.0 190 30.5
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 2.7e-08 66.6 196 27.0
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.7e-08 66.6 190 27.9
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 2.7e-08 66.6 245 24.9
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 3.6e-08 66.2 195 26.7
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 3.6e-08 66.2 220 26.4
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 3.6e-08 66.2 211 27.5
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 3.6e-08 66.2 249 26.9
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 4.7e-08 65.9 195 29.7
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 4.7e-08 65.9 193 27.5
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.7e-08 65.9 248 27.0
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 6.1e-08 65.5 195 26.7
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 6.1e-08 65.5 192 27.6
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 6.1e-08 65.5 209 26.8
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 7.9e-08 65.1 195 25.6
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 7.9e-08 65.1 247 26.3
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 7.9e-08 65.1 191 27.2
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.0e-07 64.7 192 28.1
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.0e-07 64.7 190 27.4
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.4e-07 64.3 190 26.8
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.4e-07 64.3 190 26.8
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.4e-07 64.3 191 27.2
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.8e-07 63.9 210 26.2
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 2.3e-07 63.5 210 27.1
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 3.0e-07 63.2 192 27.1
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 3.9e-07 62.8 191 27.2
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.0e-06 60.5 202 27.2
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 3.3e-06 59.7 281 23.8
Ca_28939_v3 Cicer arietinum L. HOM05D065742 ORTHO05D034102 9.7e-06 58.2 201 25.9


User provided reference genes

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