Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1581.6 801 100.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 8.9e-87 325.9 529 35.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.2e-86 325.5 529 35.3
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 1.3e-85 322.0 643 33.0
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 1.7e-85 321.6 525 35.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 2.2e-85 321.2 528 36.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 4.9e-85 320.1 540 36.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.1e-84 318.9 537 35.8
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.1e-84 318.9 532 35.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.4e-84 318.5 546 34.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 3.2e-84 317.4 527 36.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 4.1e-84 317.0 527 35.7
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 4.1e-84 317.0 538 34.6
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 5.4e-84 316.6 531 35.6
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 7.1e-84 316.2 543 34.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 9.2e-84 315.8 538 34.4
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 9.2e-84 315.8 529 34.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 1.2e-83 315.5 528 35.8
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.2e-83 315.5 542 34.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 1.2e-83 315.5 526 35.9
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 2.1e-83 314.7 524 36.6
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 2.7e-83 314.3 539 34.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.7e-83 314.3 528 35.6
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 2.7e-83 314.3 542 34.1
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.7e-83 314.3 527 35.3
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 3.5e-83 313.9 525 35.2
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 4.6e-83 313.5 532 34.8
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 4.6e-83 313.5 544 34.2
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.6e-83 313.5 536 34.3
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 6.0e-83 313.2 526 35.2
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 7.8e-83 312.8 540 35.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 1.0e-82 312.4 543 33.9
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 1.0e-82 312.4 529 35.5
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.0e-82 312.4 528 36.2
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.3e-82 312.0 524 34.4
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 1.3e-82 312.0 524 34.4
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 1.3e-82 312.0 531 33.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 1.3e-82 312.0 541 35.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 1.3e-82 312.0 525 35.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 1.3e-82 312.0 531 36.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.3e-82 312.0 584 33.7
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 1.7e-82 311.6 527 35.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 3.0e-82 310.8 528 36.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 3.0e-82 310.8 531 35.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 6.6e-82 309.7 518 35.9
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 6.6e-82 309.7 531 34.3
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 8.6e-82 309.3 531 36.0
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 8.6e-82 309.3 531 34.3
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.1e-81 308.9 534 34.8
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-81 308.9 542 34.1
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.1e-81 308.9 543 34.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.1e-81 308.9 532 35.0
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 1.5e-81 308.5 530 34.7
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 1.5e-81 308.5 533 34.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.5e-81 308.5 527 35.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.5e-81 308.5 527 35.1
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 2.5e-81 307.8 529 35.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.5e-81 307.8 481 36.4
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 3.3e-81 307.4 521 35.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.3e-81 307.0 569 33.2
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 4.3e-81 307.0 527 34.0
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.3e-81 307.0 521 34.7
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 5.6e-81 306.6 527 34.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 9.5e-81 305.8 528 34.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 9.5e-81 305.8 527 34.9
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 9.5e-81 305.8 528 35.0
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.2e-80 305.4 526 35.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.2e-80 305.4 428 39.3
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.6e-80 305.1 527 34.5
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.1e-80 304.7 543 34.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.8e-79 301.6 545 34.3
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.2e-79 300.1 574 33.6
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 6.8e-79 299.7 428 40.2
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 6.8e-79 299.7 551 32.7
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 8.9e-79 299.3 481 36.2
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 8.9e-79 299.3 527 34.0
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 8.9e-79 299.3 544 33.1
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.2e-78 298.9 427 39.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.0e-78 298.1 530 33.8
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.0e-78 298.1 428 38.8
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 3.4e-78 297.4 511 34.2
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 7.6e-78 296.2 531 34.5
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 1.3e-77 295.4 517 34.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.7e-77 295.0 513 33.9
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 3.8e-77 293.9 526 33.1
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 3.8e-77 293.9 517 35.2
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.9e-77 293.5 526 34.0
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-76 292.4 533 33.2
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.1e-76 292.4 547 32.2
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.1e-76 292.4 561 32.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 5.4e-76 290.0 551 32.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 7.1e-76 289.7 527 32.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.2e-75 288.9 530 32.8
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.2e-75 288.9 527 32.8
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.2e-75 288.9 527 33.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 2.7e-75 287.7 529 32.3
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.5e-75 287.3 574 32.9
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 4.6e-75 287.0 439 37.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 6.0e-75 286.6 528 32.6
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 6.0e-75 286.6 519 33.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 7.8e-75 286.2 537 32.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.0e-74 285.8 534 32.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.3e-74 285.4 526 32.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 1.3e-74 285.4 527 32.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-74 285.4 529 33.6
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.3e-74 284.6 530 32.6
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.9e-74 283.9 509 33.8
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 6.6e-74 283.1 547 32.5
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 8.7e-74 282.7 547 32.9
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 8.7e-74 282.7 524 31.3
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-73 282.0 530 32.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 4.3e-73 280.4 526 33.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 2.1e-72 278.1 489 33.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 3.6e-72 277.3 522 30.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 3.6e-72 277.3 667 29.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.0e-71 273.9 559 30.9
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.2e-71 273.5 496 33.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.0e-70 271.6 546 30.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 7.6e-70 269.6 517 31.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.2e-69 268.1 556 32.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 4.2e-68 263.8 497 34.2
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 4.2e-68 263.8 522 31.8
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.6e-67 260.4 519 31.6
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-64 252.3 487 32.4
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.4e-63 248.8 428 32.9
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.4e-62 244.2 590 30.2
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 7.6e-62 243.0 618 29.1
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.9e-60 238.4 420 34.8
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 3.2e-60 237.7 542 29.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.6e-59 233.8 424 34.0
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 6.0e-59 233.4 524 30.2
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.1e-57 229.2 540 28.7
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 9.9e-54 216.1 584 27.1
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 5.5e-52 210.3 548 28.1
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.8e-50 205.3 444 31.8
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.7e-50 203.4 310 38.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.5e-36 158.3 271 33.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 5.5e-36 157.1 263 36.5
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.1e-35 155.2 324 29.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.6e-35 154.1 272 33.1
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 5.3e-31 140.6 154 44.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.3e-29 136.0 207 37.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 5.5e-28 130.6 144 41.0
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 9.4e-28 129.8 93 61.3
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 8.0e-19 100.1 139 35.3
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 6.7e-18 97.1 162 34.0
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 9.7e-17 93.2 270 23.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.8e-10 70.1 79 40.5
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.2e-09 69.7 84 41.7
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.2e-08 65.5 76 39.5
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 5.3e-07 60.8 58 44.8


User provided reference genes

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