Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 0.0e+00 4362.0 2311 100.0
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 7.5e-94 350.9 1399 26.5
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 3.1e-92 345.5 1474 25.6
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.7e-91 342.4 1451 25.6
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 1.8e-87 329.7 1356 25.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 2.0e-86 326.2 1322 25.7
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 3.4e-86 325.5 1523 24.6
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 5.7e-86 324.7 1483 25.6
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 9.8e-86 323.9 1412 26.1
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 9.8e-86 323.9 1406 25.8
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 1.7e-85 323.2 1574 24.7
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 1.7e-85 323.2 1523 24.4
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 4.8e-85 321.6 775 28.6
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 4.8e-85 321.6 1440 25.3
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 6.3e-85 321.2 1553 24.9
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 8.3e-85 320.9 1322 26.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 8.3e-85 320.9 1450 25.5
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 1.8e-84 319.7 1324 25.4
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 2.4e-84 319.3 1347 25.4
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 2.4e-84 319.3 1516 25.0
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 5.4e-84 318.2 1543 25.7
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 5.4e-84 318.2 1542 24.9
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 2.0e-83 316.2 1550 24.8
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 3.5e-83 315.5 1616 25.2
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 7.7e-83 314.3 1536 25.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 1.0e-82 313.9 1525 25.0
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 1.0e-82 313.9 1304 25.4
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 1.7e-82 313.2 1325 25.8
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 1.7e-82 313.2 1354 25.1
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 1.7e-82 313.2 1554 24.6
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.7e-82 313.2 1429 24.6
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 2.3e-82 312.8 1362 25.2
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 3.8e-82 312.0 1535 25.1
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 5.0e-82 311.6 1581 25.4
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 5.0e-82 311.6 1440 24.9
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 6.6e-82 311.2 1325 25.5
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 8.6e-82 310.8 1500 24.8
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 1.1e-81 310.5 1584 24.9
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 1.9e-81 309.7 1549 24.7
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 3.3e-81 308.9 1449 24.9
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.2e-81 308.5 1682 24.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 4.2e-81 308.5 1547 24.3
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 4.2e-81 308.5 1597 25.1
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 5.5e-81 308.1 1632 24.9
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 7.2e-81 307.8 1642 24.7
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 2.1e-80 306.2 1600 25.2
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 2.1e-80 306.2 1550 25.2
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 2.1e-80 306.2 1624 24.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 3.6e-80 305.4 1561 24.7
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 6.1e-80 304.7 1562 24.5
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 8.0e-80 304.3 1511 24.4
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 1.0e-79 303.9 1474 25.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 1.4e-79 303.5 1596 24.2
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 2.3e-79 302.8 1529 24.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 2.3e-79 302.8 1626 24.4
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 2.3e-79 302.8 1806 24.8
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.0e-79 302.4 734 30.0
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.0e-79 302.4 734 30.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 3.0e-79 302.4 1564 24.4
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 4.0e-79 302.0 1580 24.9
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 4.0e-79 302.0 1625 24.2
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 8.9e-79 300.8 1560 24.6
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 2.6e-78 299.3 1637 24.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 2.6e-78 299.3 1737 23.9
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 3.4e-78 298.9 1645 25.2
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 2.2e-77 296.2 1701 24.0
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 2.8e-77 295.8 1647 24.3
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 4.9e-77 295.0 1510 25.5
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 8.3e-77 294.3 1529 24.8
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 5.4e-76 291.6 1670 24.0
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 5.4e-76 291.6 1540 25.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 5.4e-76 291.6 1311 24.5
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.2e-75 290.4 1481 24.0
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 1.2e-75 290.4 1656 24.6
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.2e-75 290.4 1882 24.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.7e-75 289.3 1563 24.4
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 4.5e-75 288.5 1783 24.7
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 1.0e-74 287.3 1702 24.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 2.9e-74 285.8 1781 24.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 5.0e-74 285.0 1693 24.5
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 8.6e-74 284.3 1766 24.1
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 1.1e-73 283.9 1808 24.2
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 1.9e-73 283.1 1671 23.7
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 3.3e-73 282.3 1887 23.8
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 2.8e-72 279.3 1377 24.3
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 8.9e-71 274.2 1627 23.3
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 1.5e-70 273.5 661 29.7
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 2.6e-70 272.7 1757 23.7
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 2.6e-70 272.7 1574 23.6
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.7e-69 270.0 1744 24.1
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.3e-69 267.7 1375 25.5
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 1.2e-67 263.8 1214 26.1
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 2.7e-67 262.7 1852 23.2
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 2.3e-66 259.6 1125 25.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 3.9e-66 258.8 2064 23.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 5.2e-63 248.4 1601 24.2
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 5.2e-63 248.4 1553 23.8
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 3.7e-61 242.3 1190 23.5
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 3.5e-59 235.7 896 26.5
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.1e-56 224.6 767 27.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.4e-55 223.8 890 26.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 1.7e-50 206.8 1372 21.9
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 8.6e-50 204.5 738 27.6
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 2.0e-46 193.4 905 24.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.7e-45 190.3 878 24.4
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 3.8e-45 189.1 790 26.3
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.9e-44 186.8 945 25.4
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 3.9e-42 179.1 1771 20.3
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 6.2e-40 171.8 542 27.9
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-38 167.5 321 30.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.9e-36 160.2 520 24.8
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 1.1e-31 144.4 566 27.4
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 5.3e-31 142.1 557 26.9
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 2.2e-29 136.7 618 22.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 7.9e-27 128.3 648 25.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.4e-20 107.5 157 33.1
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 8.7e-18 98.2 225 27.1
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 9.0e-15 88.2 395 27.8
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.6e-11 77.4 118 32.2
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.1e-07 64.7 141 27.0
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.8e-07 63.9 74 47.3
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 6.9e-07 62.0 184 31.5
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.0e-06 60.5 89 33.7
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 2.6e-06 60.1 114 36.8
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.5e-06 59.3 115 31.3
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.7e-06 58.5 74 45.9


User provided reference genes

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