Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.3e-128 462.2 231 100.0
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 6.6e-35 151.8 225 41.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 7.3e-34 148.3 224 38.8
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 9.6e-34 147.9 225 40.4
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 9.6e-34 147.9 230 40.4
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.3e-33 147.5 228 40.4
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.6e-33 147.1 225 40.4
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.6e-33 147.1 225 40.0
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.1e-33 146.7 222 40.5
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 2.1e-33 146.7 228 41.2
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 2.8e-33 146.4 222 40.5
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.8e-33 146.4 231 39.0
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 3.6e-33 146.0 231 39.0
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 4.8e-33 145.6 225 40.4
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 4.8e-33 145.6 225 40.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 4.8e-33 145.6 222 40.1
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 6.2e-33 145.2 228 39.9
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.2e-33 145.2 225 40.0
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 6.2e-33 145.2 224 40.6
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 6.2e-33 145.2 232 40.5
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 6.2e-33 145.2 222 40.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 6.2e-33 145.2 228 39.5
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 6.2e-33 145.2 228 38.6
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 8.1e-33 144.8 230 39.6
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 8.1e-33 144.8 225 39.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.1e-32 144.4 225 39.6
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 1.1e-32 144.4 229 38.9
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.1e-32 144.4 225 39.6
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.1e-32 144.4 225 39.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.4e-32 144.1 225 40.0
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.4e-32 144.1 225 40.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.4e-32 144.1 225 40.0
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.8e-32 143.7 222 40.1
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.8e-32 143.7 222 39.2
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.8e-32 143.7 222 39.2
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.8e-32 143.7 229 38.9
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.8e-32 143.7 225 39.6
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.8e-32 143.7 222 39.2
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.4e-32 143.3 225 39.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.4e-32 143.3 225 39.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.4e-32 143.3 223 39.0
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 2.4e-32 143.3 222 39.6
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 2.4e-32 143.3 225 38.7
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 2.4e-32 143.3 225 40.9
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 3.1e-32 142.9 222 39.2
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.1e-32 142.9 203 40.4
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.1e-32 142.9 222 39.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 3.1e-32 142.9 225 39.1
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 3.1e-32 142.9 224 41.1
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.1e-32 142.9 228 38.2
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.1e-32 142.9 225 39.6
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 3.1e-32 142.9 225 39.1
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 3.1e-32 142.9 225 39.1
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 4.0e-32 142.5 228 39.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.0e-32 142.5 222 38.7
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 4.0e-32 142.5 225 39.6
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 4.0e-32 142.5 222 38.7
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 4.0e-32 142.5 222 38.7
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 4.0e-32 142.5 225 39.6
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.0e-32 142.5 225 39.1
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 4.0e-32 142.5 225 39.1
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.3e-32 142.1 225 39.6
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 5.3e-32 142.1 225 39.1
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 5.3e-32 142.1 222 39.2
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 5.3e-32 142.1 222 39.2
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 5.3e-32 142.1 209 41.1
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.9e-32 141.7 208 39.4
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.9e-32 141.7 208 39.4
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 6.9e-32 141.7 225 39.1
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.9e-32 141.7 206 40.3
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 9.0e-32 141.4 225 39.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 9.0e-32 141.4 203 40.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 9.0e-32 141.4 225 38.2
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 9.0e-32 141.4 228 39.0
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 9.0e-32 141.4 225 41.8
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 9.0e-32 141.4 225 41.8
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 9.0e-32 141.4 230 38.7
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 9.0e-32 141.4 229 38.0
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 9.0e-32 141.4 206 40.3
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.2e-31 141.0 218 39.9
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.2e-31 141.0 225 38.7
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.2e-31 141.0 203 40.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.2e-31 141.0 229 39.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.2e-31 141.0 218 39.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.2e-31 141.0 225 39.6
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-31 140.6 225 39.1
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-31 140.6 225 39.1
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.5e-31 140.6 218 39.0
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.5e-31 140.6 225 38.7
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.5e-31 140.6 225 39.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 2.0e-31 140.2 203 39.9
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.0e-31 140.2 218 39.4
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.0e-31 140.2 208 38.9
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.0e-31 140.2 208 39.4
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.0e-31 140.2 225 39.1
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 2.0e-31 140.2 225 38.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.6e-31 139.8 207 39.6
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.6e-31 139.8 225 38.2
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.4e-31 139.4 225 38.7
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.4e-31 139.4 222 39.2
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 3.4e-31 139.4 225 41.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 4.5e-31 139.0 203 39.4
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 4.5e-31 139.0 232 38.4
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.5e-31 139.0 225 39.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 5.8e-31 138.7 235 38.7
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 5.8e-31 138.7 203 39.9
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 5.8e-31 138.7 203 39.9
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 7.6e-31 138.3 203 39.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 9.9e-31 137.9 203 42.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.3e-30 137.5 225 38.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.3e-30 137.5 225 38.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.8e-30 136.0 203 39.4
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 3.8e-30 136.0 225 37.8
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 6.4e-30 135.2 225 36.4
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 4.2e-29 132.5 210 38.6
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 5.4e-29 132.1 226 35.8
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.3e-29 131.3 208 38.5
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 6.0e-28 128.6 212 37.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.3e-27 127.5 203 39.4
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 4.3e-26 122.5 177 39.5
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 5.6e-26 122.1 168 42.9
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 5.6e-26 122.1 209 36.4
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 7.4e-26 121.7 177 39.0
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 9.6e-26 121.3 177 39.0
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.1e-25 120.2 227 34.8
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 4.8e-25 119.0 166 43.4
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 4.8e-25 119.0 210 36.7
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.8e-24 117.1 231 35.9
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.9e-24 115.2 177 36.7
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.5e-23 114.0 148 44.6
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 5.8e-23 112.1 207 35.7
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 5.8e-23 112.1 230 34.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.3e-22 110.9 223 35.0
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.7e-22 110.5 223 35.4
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 2.2e-22 110.2 162 40.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 3.8e-22 109.4 237 35.0
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.1e-21 107.8 203 35.0
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.9e-21 107.1 147 43.5
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 3.2e-21 106.3 218 36.2
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.2e-21 105.9 139 41.7
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.3e-21 104.8 190 35.3
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 2.7e-20 103.2 165 37.6
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.6e-20 102.4 158 39.9
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.0e-20 102.1 150 40.0
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.0e-19 99.8 175 36.0
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.9e-19 99.4 139 41.0
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.7e-19 98.6 139 39.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.2e-17 92.0 128 42.2
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 2.4e-16 90.1 167 37.1
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 6.9e-16 88.6 128 41.4
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 4.5e-15 85.9 128 42.2
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 7.6e-15 85.1 215 32.6
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 3.8e-14 82.8 231 30.7
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.5e-13 80.1 163 35.6


User provided reference genes

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