Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 0.0e+00 1939.9 943 100.0
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 5.8e-37 160.6 514 26.3
Cre11.g478184 Chlamydomonas reinhardtii HOM05D004082 ORTHO05D004729 4.5e-29 134.4 439 28.5
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 9.0e-22 110.2 466 27.0
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 3.8e-20 104.8 387 26.9
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.5e-20 104.0 311 28.0
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.9e-19 102.4 311 29.9
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 3.2e-19 101.7 408 26.5
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 3.2e-19 101.7 408 26.5
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 3.2e-19 101.7 308 27.9
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 5.5e-19 100.9 309 29.8
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 7.2e-19 100.5 581 24.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 9.4e-19 100.1 413 23.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 9.4e-19 100.1 306 29.7
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 1.2e-18 99.8 393 27.2
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 2.1e-18 99.0 310 27.7
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 2.1e-18 99.0 488 25.2
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 2.7e-18 98.6 494 26.7
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 2.7e-18 98.6 385 26.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 3.6e-18 98.2 308 29.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 4.6e-18 97.8 310 28.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 4.6e-18 97.8 311 28.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 4.6e-18 97.8 304 28.0
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.1e-18 97.4 309 28.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 6.1e-18 97.4 356 27.0
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 7.9e-18 97.1 387 26.6
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 7.9e-18 97.1 245 31.0
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 1.0e-17 96.7 490 25.7
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.0e-17 96.7 484 25.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 1.4e-17 96.3 310 27.7
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 1.4e-17 96.3 311 27.3
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 1.4e-17 96.3 310 27.7
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 1.4e-17 96.3 422 26.5
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 1.4e-17 96.3 413 24.9
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 1.8e-17 95.9 519 25.8
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.8e-17 95.9 191 30.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.8e-17 95.9 307 29.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 2.3e-17 95.5 293 29.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 2.3e-17 95.5 413 27.1
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 3.0e-17 95.1 310 26.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 3.0e-17 95.1 308 27.6
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 3.0e-17 95.1 489 25.6
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 3.0e-17 95.1 189 34.9
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 3.9e-17 94.7 607 23.7
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 3.9e-17 94.7 310 26.8
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 3.9e-17 94.7 604 23.8
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 3.9e-17 94.7 309 25.9
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 3.9e-17 94.7 428 25.9
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 5.1e-17 94.4 302 27.8
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 6.7e-17 94.0 379 26.4
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 6.7e-17 94.0 318 29.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 6.7e-17 94.0 308 26.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 8.8e-17 93.6 310 27.1
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 8.8e-17 93.6 493 26.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 8.8e-17 93.6 428 25.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 1.1e-16 93.2 310 27.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 1.1e-16 93.2 310 27.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 1.1e-16 93.2 308 26.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 1.1e-16 93.2 400 25.2
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.1e-16 93.2 307 27.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 1.1e-16 93.2 315 26.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.1e-16 93.2 306 28.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 1.5e-16 92.8 602 23.9
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 1.5e-16 92.8 316 29.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.5e-16 92.8 307 29.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 1.5e-16 92.8 486 23.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.5e-16 92.8 500 24.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 1.5e-16 92.8 325 27.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 2.0e-16 92.4 307 27.0
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.0e-16 92.4 297 30.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.5e-16 92.0 273 26.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 2.5e-16 92.0 304 28.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 2.5e-16 92.0 600 23.3
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 3.3e-16 91.7 423 25.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 3.3e-16 91.7 300 28.0
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 5.7e-16 90.9 188 31.9
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 5.7e-16 90.9 308 27.9
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 5.7e-16 90.9 189 33.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 5.7e-16 90.9 280 28.9
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 5.7e-16 90.9 300 27.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 7.4e-16 90.5 302 25.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 7.4e-16 90.5 483 24.2
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 9.7e-16 90.1 309 27.2
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 9.7e-16 90.1 306 27.1
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 9.7e-16 90.1 313 28.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.3e-15 89.7 188 32.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.3e-15 89.7 188 32.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.3e-15 89.7 307 28.7
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.3e-15 89.7 300 27.7
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 1.3e-15 89.7 188 31.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 1.3e-15 89.7 416 25.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.7e-15 89.4 418 26.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.7e-15 89.4 571 24.2
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 1.7e-15 89.4 188 31.9
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 2.2e-15 89.0 614 23.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.2e-15 89.0 187 34.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 2.2e-15 89.0 307 25.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.8e-15 88.6 188 34.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 2.8e-15 88.6 305 25.2
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 3.7e-15 88.2 292 28.4
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 3.7e-15 88.2 188 30.9
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 4.8e-15 87.8 405 25.9
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 6.3e-15 87.4 189 31.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 6.3e-15 87.4 188 32.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 6.3e-15 87.4 287 26.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 8.2e-15 87.0 408 25.2
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 8.2e-15 87.0 317 26.2
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 1.1e-14 86.7 188 31.9
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 1.1e-14 86.7 188 33.5
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 1.1e-14 86.7 185 31.9
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 1.4e-14 86.3 188 30.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 1.4e-14 86.3 294 28.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 1.4e-14 86.3 188 30.3
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.8e-14 85.9 188 29.3
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 2.4e-14 85.5 304 26.3
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 3.1e-14 85.1 188 31.4
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 4.1e-14 84.7 318 26.1
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 4.1e-14 84.7 287 27.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 5.3e-14 84.3 188 28.7
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 9.1e-14 83.6 188 31.9
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 9.1e-14 83.6 188 31.9
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 1.2e-13 83.2 288 27.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 2.0e-13 82.4 307 27.4
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 2.6e-13 82.0 430 24.9
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 7.7e-13 80.5 265 29.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 1.3e-12 79.7 188 27.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 8.5e-12 77.0 188 26.6
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 5.1e-09 67.8 360 24.2
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 5.1e-09 67.8 279 27.2
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.4e-08 64.7 134 29.9
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 7.4e-08 63.9 294 22.8


User provided reference genes

Program Settings