Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 2.2e-230 802.0 417 100.0
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 3.1e-51 206.8 370 37.6
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 9.1e-51 205.3 373 37.5
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 9.1e-51 205.3 368 38.6
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.2e-50 204.9 370 37.3
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 1.6e-50 204.5 373 37.8
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 3.5e-50 203.4 342 38.3
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 5.9e-50 202.6 373 37.0
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 7.7e-50 202.2 369 37.1
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.0e-49 201.8 368 38.3
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.3e-49 201.4 368 37.2
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 1.3e-49 201.4 368 37.2
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 2.3e-49 200.7 368 36.7
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 2.9e-49 200.3 368 37.2
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 3.8e-49 199.9 368 37.5
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 3.8e-49 199.9 376 37.2
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 5.0e-49 199.5 365 37.5
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 5.0e-49 199.5 365 38.1
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 6.5e-49 199.1 368 37.8
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 8.6e-49 198.7 368 37.2
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 8.6e-49 198.7 368 37.2
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 8.6e-49 198.7 368 37.2
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 8.6e-49 198.7 368 38.3
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.1e-48 198.4 368 37.2
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.1e-48 198.4 368 37.2
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 1.1e-48 198.4 369 37.9
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 1.1e-48 198.4 368 37.0
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 1.5e-48 198.0 368 36.4
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 1.5e-48 198.0 372 36.8
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 1.5e-48 198.0 377 36.9
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 1.9e-48 197.6 369 38.2
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.5e-48 197.2 377 37.4
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 3.2e-48 196.8 368 36.1
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 4.2e-48 196.4 369 37.4
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 4.2e-48 196.4 368 36.4
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 5.5e-48 196.1 368 35.3
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 5.5e-48 196.1 364 36.8
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 7.2e-48 195.7 368 37.2
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 7.2e-48 195.7 374 36.6
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 9.5e-48 195.3 374 36.4
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 2.1e-47 194.1 357 36.7
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 2.8e-47 193.7 368 35.3
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 2.8e-47 193.7 368 36.1
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.8e-47 193.7 368 36.7
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.8e-47 193.7 368 35.9
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 3.6e-47 193.4 392 37.0
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 3.6e-47 193.4 368 36.4
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 3.6e-47 193.4 364 37.4
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 4.7e-47 193.0 412 35.4
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 6.1e-47 192.6 392 36.7
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 6.1e-47 192.6 371 36.4
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 1.0e-46 191.8 400 34.5
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 1.8e-46 191.0 368 36.1
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.8e-46 191.0 368 35.9
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.3e-46 190.7 342 36.5
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 3.0e-46 190.3 369 37.4
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 4.0e-46 189.9 368 35.3
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 4.0e-46 189.9 373 38.6
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 4.0e-46 189.9 373 38.1
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 5.2e-46 189.5 370 35.1
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 5.2e-46 189.5 372 36.3
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 6.8e-46 189.1 357 36.4
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 8.9e-46 188.7 368 37.0
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 8.9e-46 188.7 368 36.4
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 1.2e-45 188.3 368 36.1
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.2e-45 188.3 368 35.1
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 1.2e-45 188.3 394 36.5
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.5e-45 188.0 368 35.1
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 2.6e-45 187.2 368 37.5
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 2.6e-45 187.2 368 37.5
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 2.6e-45 187.2 368 35.9
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 5.7e-45 186.0 381 35.7
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 1.3e-44 184.9 377 34.5
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 1.7e-44 184.5 358 36.9
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 2.2e-44 184.1 368 35.3
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.2e-44 184.1 368 37.0
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 4.9e-44 183.0 361 35.5
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 8.3e-44 182.2 393 35.6
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 1.1e-43 181.8 412 35.2
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.1e-43 181.8 356 35.7
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.8e-43 181.0 368 36.4
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.4e-43 180.6 369 36.9
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 2.4e-43 180.6 373 36.5
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 2.4e-43 180.6 368 37.0
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 3.1e-43 180.3 369 36.0
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 4.1e-43 179.9 321 36.8
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 4.1e-43 179.9 368 35.9
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 4.1e-43 179.9 368 36.4
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 7.0e-43 179.1 336 36.6
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 7.0e-43 179.1 381 36.0
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 9.2e-43 178.7 393 34.1
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 3.5e-42 176.8 277 37.2
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.9e-41 173.7 373 33.5
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 3.8e-41 173.3 357 34.5
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 8.6e-41 172.2 327 35.8
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 2.5e-40 170.6 370 33.5
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 8.3e-36 155.6 367 32.4
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 3.2e-35 153.7 301 38.2
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 7.0e-35 152.5 330 32.1
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 2.7e-34 150.6 334 33.8
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 3.5e-34 150.2 263 38.0
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 2.3e-33 147.5 334 33.2
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 2.2e-28 131.0 417 29.7
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 9.2e-27 125.6 249 36.9
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 9.5e-24 115.5 198 37.9
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 1.6e-23 114.8 372 30.1
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 6.8e-22 109.4 266 35.0
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 3.4e-21 107.1 368 28.0
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.9e-19 101.3 403 26.8
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.2e-18 98.6 141 39.0
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 6.0e-18 96.3 140 37.1
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 1.3e-17 95.1 202 37.6
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 5.6e-16 89.7 197 35.0
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 9.5e-16 89.0 178 36.5
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 6.2e-15 86.3 145 41.4
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 2.3e-09 67.8 112 39.3
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 2.3e-09 67.8 117 35.9
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 8.7e-09 65.9 60 50.0


User provided reference genes

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