Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 0.0e+00 2671.0 1388 100.0
Cfa023460 Carpinus fangiana HOM05D032100 ORTHO05D125578 7.0e-31 141.0 618 22.0
Cfa023432 Carpinus fangiana HOM05D002836 ORTHO05D003107 1.9e-28 132.9 600 25.5
Cfa027021 Carpinus fangiana HOM05D009015 ORTHO05D124016 3.9e-21 108.6 235 29.4
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.1e-20 107.1 344 29.1
Cfa024409 Carpinus fangiana HOM05D009015 ORTHO05D124117 1.1e-18 100.5 175 37.1
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-18 100.5 270 32.6
Cfa027180 Carpinus fangiana HOM05D032100 ORTHO05D122114 1.8e-18 99.8 224 27.2
Cfa024850 Carpinus fangiana HOM05D009015 ORTHO05D125985 7.6e-17 94.4 564 22.3
Cfa023244 Carpinus fangiana HOM05D009015 ORTHO05D125751 3.8e-16 92.0 210 29.5
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 6.0e-14 84.7 272 28.7
Cfa025034 Carpinus fangiana HOM05D009015 ORTHO05D126315 1.0e-13 84.0 205 30.2
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 6.6e-13 81.3 226 31.9
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.5e-12 80.1 225 31.6
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 1.5e-12 80.1 194 32.0
Cre02.g095076 Chlamydomonas reinhardtii HOM05D009015 ORTHO05D043744 2.5e-12 79.3 208 25.5
Cfa026721 Carpinus fangiana HOM05D009015 ORTHO05D016913 3.3e-12 79.0 231 26.4
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 4.3e-12 78.6 242 28.9
Cfa022433 Carpinus fangiana HOM05D003851 ORTHO05D016913 1.2e-11 77.0 192 26.0
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.2e-11 77.0 226 30.5
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 2.1e-11 76.3 252 28.6
Cfa026759 Carpinus fangiana HOM05D009015 ORTHO05D123461 2.1e-11 76.3 190 23.2
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 2.1e-11 76.3 232 29.7
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 2.1e-11 76.3 225 30.2
Cfa025662 Carpinus fangiana HOM05D031017 ORTHO05D016913 3.6e-11 75.5 249 24.9
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 4.7e-11 75.1 215 30.7
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 4.7e-11 75.1 258 27.9
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 4.7e-11 75.1 224 29.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 4.7e-11 75.1 224 29.9
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 6.2e-11 74.7 186 31.7
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 6.2e-11 74.7 188 45.2
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 8.1e-11 74.3 244 27.9
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.1e-10 73.9 224 29.9
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.1e-10 73.9 185 31.4
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 1.4e-10 73.6 186 30.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.4e-10 73.6 190 31.1
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.4e-10 73.6 194 30.4
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.4e-10 73.6 239 29.3
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.4e-10 73.6 189 31.7
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.4e-10 73.6 217 29.5
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.8e-10 73.2 190 30.5
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.8e-10 73.2 194 31.4
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 3.1e-10 72.4 217 28.6
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 3.1e-10 72.4 222 29.7
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.1e-10 72.4 214 29.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.1e-10 72.4 190 30.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-10 72.4 210 30.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-10 72.4 210 30.0
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-10 72.4 210 30.0
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.1e-10 72.4 210 30.0
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.1e-10 72.4 308 27.3
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.1e-10 72.4 208 29.8
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.1e-10 72.4 208 29.8
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 4.0e-10 72.0 207 29.0
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 4.0e-10 72.0 233 28.3
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 4.0e-10 72.0 226 28.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 5.2e-10 71.6 219 29.2
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 5.2e-10 71.6 190 31.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 5.2e-10 71.6 217 30.4
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 6.9e-10 71.2 209 28.2
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 6.9e-10 71.2 223 30.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 6.9e-10 71.2 192 30.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 9.0e-10 70.9 206 28.6
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 9.0e-10 70.9 206 28.6
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 9.0e-10 70.9 206 28.6
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 9.0e-10 70.9 206 28.6
Cfa027306 Carpinus fangiana HOM05D009015 ORTHO05D125801 9.0e-10 70.9 198 24.7
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 9.0e-10 70.9 211 29.4
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 9.0e-10 70.9 190 28.9
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.2e-09 70.5 190 30.5
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.2e-09 70.5 189 29.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-09 70.5 190 29.5
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.2e-09 70.5 219 28.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.2e-09 70.5 190 30.5
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.5e-09 70.1 190 29.5
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.5e-09 70.1 190 29.5
Cfa027240 Carpinus fangiana HOM05D009015 ORTHO05D123112 1.5e-09 70.1 156 28.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.5e-09 70.1 190 30.0
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.5e-09 70.1 190 30.5
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.0e-09 69.7 190 28.9
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.0e-09 69.7 191 29.8
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.0e-09 69.7 188 30.9
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 2.6e-09 69.3 190 28.9
Cfa026612 Carpinus fangiana HOM05D009015 ORTHO05D124788 2.6e-09 69.3 200 27.0
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.6e-09 69.3 190 28.9
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.6e-09 69.3 190 30.0
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.4e-09 68.9 232 27.6
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.4e-09 68.9 198 28.3
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 3.4e-09 68.9 186 29.6
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 3.4e-09 68.9 194 29.4
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 3.4e-09 68.9 183 32.2
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 4.4e-09 68.6 189 29.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 4.4e-09 68.6 315 26.7
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 4.4e-09 68.6 187 31.0
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 5.8e-09 68.2 245 27.8
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 5.8e-09 68.2 190 28.4
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 5.8e-09 68.2 189 31.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 5.8e-09 68.2 218 27.5
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.8e-09 68.2 188 44.1
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 7.6e-09 67.8 224 29.0
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 7.6e-09 67.8 191 30.4
Cfa022781 Carpinus fangiana HOM05D009015 ORTHO05D122820 9.9e-09 67.4 206 25.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 9.9e-09 67.4 184 27.7
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.3e-08 67.0 186 29.0
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 1.3e-08 67.0 186 29.0
Cfa026004 Carpinus fangiana HOM05D031017 ORTHO05D016913 1.3e-08 67.0 153 24.8
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.3e-08 67.0 305 26.9
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.7e-08 66.6 188 29.3
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.7e-08 66.6 261 26.1
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 2.2e-08 66.2 186 28.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.2e-08 66.2 222 27.9
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.2e-08 66.2 213 29.6
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.2e-08 66.2 188 28.7
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.2e-08 66.2 186 28.0
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 4.9e-08 65.1 222 28.4
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 8.4e-08 64.3 188 28.7
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 8.4e-08 64.3 242 27.3
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 8.4e-08 64.3 185 28.6
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.9e-07 63.2 243 28.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.9e-07 63.2 301 26.6
Cfa026124 Carpinus fangiana HOM05D009015 ORTHO05D043744 2.4e-07 62.8 208 21.2
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.4e-07 62.8 304 24.3
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 4.2e-07 62.0 186 26.9
Cfa026797 Carpinus fangiana HOM05D009015 ORTHO05D013560 9.3e-07 60.8 217 24.4
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 9.3e-07 60.8 199 28.1
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.2e-06 60.5 343 25.7
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-06 60.5 312 25.6
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 1.6e-06 60.1 312 25.6
Ca_29065_v3 Cicer arietinum L. HOM05D009015 ORTHO05D014174 2.1e-06 59.7 192 27.6
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.1e-06 59.7 307 25.4
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.1e-06 59.7 312 25.6
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.7e-06 59.3 181 28.2


User provided reference genes

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