Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023973 Carpinus fangiana HOM05D003384 ORTHO05D005024 0.0e+00 3118.9 1553 100.0
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 4.4e-215 753.1 1303 36.7
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 9.8e-215 751.9 1296 36.4
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 1.7e-214 751.1 1321 36.6
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 9.1e-213 745.3 1307 37.2
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 9.1e-213 745.3 1310 36.6
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 4.5e-212 743.0 1305 36.4
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 4.5e-212 743.0 1317 36.1
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 4.5e-212 743.0 1383 35.9
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 7.7e-212 742.3 1309 36.7
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 7.7e-212 742.3 1301 37.0
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 7.7e-212 742.3 1455 34.8
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.3e-211 741.5 1378 36.1
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 1.7e-211 741.1 1407 35.7
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 1.7e-211 741.1 1316 36.8
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 2.2e-211 740.7 1296 36.5
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 5.0e-211 739.6 1388 35.5
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 1.1e-210 738.4 1306 36.9
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.9e-210 737.6 1306 36.6
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 1.9e-210 737.6 1378 36.1
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 1.9e-210 737.6 1318 36.5
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 1.9e-210 737.6 1307 35.9
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 2.5e-210 737.3 1319 36.9
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 3.2e-210 736.9 1433 35.7
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 3.2e-210 736.9 1309 36.5
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 4.2e-210 736.5 1303 37.1
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 4.2e-210 736.5 1317 36.8
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 5.5e-210 736.1 1323 36.6
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 5.5e-210 736.1 1306 36.4
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 7.2e-210 735.7 1308 36.0
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 9.5e-210 735.3 1452 34.8
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 9.5e-210 735.3 1378 35.8
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 1.2e-209 734.9 1408 35.7
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 1.2e-209 734.9 1298 36.4
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 1.6e-209 734.6 1408 35.7
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 1.6e-209 734.6 1301 36.4
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.6e-209 734.6 1452 34.7
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 2.1e-209 734.2 1408 35.7
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 2.1e-209 734.2 1378 36.0
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.8e-209 733.8 1386 35.6
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 2.8e-209 733.8 1318 36.6
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 3.6e-209 733.4 1378 35.8
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 3.6e-209 733.4 1312 36.4
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 4.7e-209 733.0 1408 35.7
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 4.7e-209 733.0 1306 37.0
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 4.7e-209 733.0 1305 36.3
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 4.7e-209 733.0 1324 35.8
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 6.1e-209 732.6 1323 35.9
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 6.1e-209 732.6 1385 35.9
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 8.0e-209 732.3 1310 36.9
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 8.0e-209 732.3 1448 34.5
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 8.0e-209 732.3 1385 36.2
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 1.0e-208 731.9 1474 34.7
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.4e-208 731.5 1302 36.5
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 1.4e-208 731.5 1304 36.7
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 1.4e-208 731.5 1451 35.1
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 1.4e-208 731.5 1327 36.7
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 1.4e-208 731.5 1380 34.9
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.8e-208 731.1 1446 34.8
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 3.0e-208 730.3 1313 36.7
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 3.0e-208 730.3 1313 36.7
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 3.0e-208 730.3 1309 36.4
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 3.0e-208 730.3 1383 35.4
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 4.0e-208 729.9 1378 35.9
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 4.0e-208 729.9 1321 36.4
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 4.0e-208 729.9 1307 37.0
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 5.2e-208 729.6 1297 36.2
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 6.8e-208 729.2 1316 36.4
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 6.8e-208 729.2 1448 34.3
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 8.8e-208 728.8 1408 35.7
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 8.8e-208 728.8 1312 36.7
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 8.8e-208 728.8 1321 36.3
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 8.8e-208 728.8 1312 36.4
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.2e-207 728.4 1314 36.5
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.2e-207 728.4 1315 36.3
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 1.2e-207 728.4 1308 36.9
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 1.5e-207 728.0 1308 36.9
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 2.0e-207 727.6 1452 34.5
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 2.0e-207 727.6 1305 36.3
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 2.0e-207 727.6 1308 36.9
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 2.6e-207 727.2 1378 35.5
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 2.6e-207 727.2 1307 36.3
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 4.4e-207 726.5 1446 35.4
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 5.7e-207 726.1 1313 36.5
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 9.8e-207 725.3 1304 36.6
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 1.3e-206 724.9 1376 35.5
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 3.7e-206 723.4 1452 34.7
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 1.1e-205 721.8 1308 36.6
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 1.1e-205 721.8 1445 34.3
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 1.4e-205 721.5 1316 36.3
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 1.4e-205 721.5 1431 34.5
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 1.4e-205 721.5 1308 36.1
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 1.4e-205 721.5 1304 36.5
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.8e-205 721.1 1311 36.5
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 2.4e-205 720.7 1447 35.0
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 3.1e-205 720.3 1316 36.3
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 4.1e-205 719.9 1308 36.2
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 7.0e-205 719.2 1416 35.0
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 9.2e-205 718.8 1309 36.7
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 1.2e-204 718.4 1307 36.1
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 2.7e-204 717.2 1322 35.9
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 3.5e-204 716.8 1309 35.8
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 4.5e-204 716.5 1310 36.3
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 4.5e-204 716.5 1310 36.3
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 4.5e-204 716.5 1313 36.2
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 5.9e-204 716.1 1321 35.4
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 5.9e-204 716.1 1310 36.3
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 1.0e-203 715.3 1315 36.1
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 2.9e-203 713.8 1319 35.2
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 1.5e-202 711.4 1366 35.1
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 1.5e-202 711.4 1299 36.2
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 3.3e-202 710.3 1308 35.5
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 4.3e-202 709.9 1293 35.5
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 8.0e-201 705.7 1398 34.8
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 8.9e-200 702.2 1317 36.0
unitig_0.g1015 Utricularia gibba HOM05D003384 ORTHO05D005024 2.6e-199 700.7 1301 35.8
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 4.9e-198 696.4 1177 37.0
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 8.3e-198 695.7 1294 36.2
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 5.4e-197 693.0 1307 35.8
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 5.9e-196 689.5 1331 34.9
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 7.8e-196 689.1 1292 35.8
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 5.6e-194 682.9 1310 35.7
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 8.0e-193 679.1 1455 34.2
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 1.1e-186 658.7 1246 35.4
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 1.5e-183 648.3 1310 34.6
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 1.5e-178 631.7 1259 34.8
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 9.9e-175 619.0 1313 34.0
Peaxi162Scf00685g00122 Petunia axillaris HOM05D003384 ORTHO05D005024 9.2e-173 612.5 1173 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2607 Anthoceros agrestis HOM05D003384 ORTHO05D005024 1.5e-170 605.1 1136 35.1
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 5.4e-165 586.6 1068 36.0
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 5.6e-162 576.6 1278 33.9
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 4.5e-151 540.4 967 37.8
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 4.2e-149 533.9 1565 29.1
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 5.5e-149 533.5 960 36.9
Potri.008G058600 Populus trichocarpa HOM05D003384 ORTHO05D005024 8.5e-134 483.0 1010 34.1
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 1.8e-131 475.3 839 36.8
GSVIVG01016499001 Vitis vinifera HOM05D003384 ORTHO05D005024 2.7e-124 451.4 981 32.8
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 2.5e-117 428.3 758 36.7
AUR62009267 Chenopodium quinoa HOM05D003384 ORTHO05D005024 4.7e-116 424.1 896 34.9
Dinv10578 Davidia involucrata HOM05D003384 ORTHO05D005024 1.3e-102 379.4 803 34.4
CDE05G1678 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 3.2e-101 374.8 671 37.4
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 1.8e-99 369.0 1092 29.6
Haze_26202 Corylus avellana HOM05D003384 ORTHO05D005024 4.1e-96 357.8 1045 29.3
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.2e-92 346.3 579 35.9
TAR629G0479 Trochodendron aralioides HOM05D003384 ORTHO05D005024 3.4e-90 338.2 669 35.6
AUR62009268 Chenopodium quinoa HOM05D003384 ORTHO05D005024 6.0e-79 300.8 484 38.2
SEGI_36858 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 3.6e-76 291.6 479 36.1
Dinv10579 Davidia involucrata HOM05D003384 ORTHO05D005024 2.0e-74 285.8 501 35.5
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 2.4e-72 278.9 627 33.0
ClCG10G005920 Citrullus lanatus HOM05D003384 ORTHO05D005024 7.0e-72 277.3 471 36.1
TAR629G0426 Trochodendron aralioides HOM05D003384 ORTHO05D005024 1.7e-70 272.7 523 34.8
Medtr3g085010 Medicago truncatula HOM05D003384 ORTHO05D005024 8.1e-68 263.8 629 31.8
TAR629G2114 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.5e-53 215.7 423 33.6
Cpa.g.c38225 Carica papaya HOM05D003384 ORTHO05D005024 1.0e-46 193.7 359 35.9
Nn1g07989 Nelumbo nucifera HOM05D003384 ORTHO05D005024 2.4e-40 172.6 385 31.4
vmacro22732 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 7.4e-37 161.0 374 30.5
Oeu031352.2 Olea europaea HOM05D003384 ORTHO05D005024 2.6e-34 152.5 360 30.3
Haze_26203 Corylus avellana HOM05D003384 ORTHO05D005024 8.2e-28 131.0 344 29.9
BcaB05g24847 Brassica carinata HOM05D003384 ORTHO05D005024 1.2e-26 127.1 198 35.9
SalBow1G4952 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.6e-26 125.9 359 28.4
SalBow2G3548 Salvia bowleyana HOM05D003384 ORTHO05D005024 7.9e-23 114.4 157 41.4
Sc09g0006010 Simmondsia chinensis HOM05D003384 ORTHO05D005024 2.2e-20 106.3 157 38.9
TAR629G1400 Trochodendron aralioides HOM05D003384 ORTHO05D005024 8.5e-17 94.4 83 56.6
AagrBONN_evm.TU.Sc2ySwM_228.1807 Anthoceros agrestis HOM05D003384 ORTHO05D023565 2.0e-10 73.2 72 54.2


User provided reference genes

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