Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 0.0e+00 1931.8 1379 100.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 0.0e+00 1464.9 1379 80.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.7e-306 1055.4 1381 64.8
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.1e-291 1007.3 1108 62.7
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.6e-272 943.7 1383 56.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.8e-266 922.2 1381 57.1
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.5e-259 900.6 1382 57.8
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.4e-252 877.5 1382 54.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.3e-246 856.3 1381 55.5
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 8.9e-244 848.2 1386 52.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.4e-241 839.0 1534 48.4
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 3.1e-236 823.2 1401 51.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 5.2e-236 822.4 1401 51.7
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 9.8e-235 818.1 1375 51.3
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.7e-234 817.4 1385 51.8
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.1e-222 778.1 1469 50.2
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 4.4e-219 766.1 1378 51.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.9e-218 762.7 1556 45.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-214 751.5 1378 51.3
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.3e-214 749.6 1382 54.9
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 9.6e-214 748.4 1384 50.6
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.0e-212 743.0 1421 45.2
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 2.0e-211 740.7 1382 48.4
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.3e-210 738.0 1381 47.1
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-207 728.4 1379 50.0
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 7.4e-206 722.2 1579 43.5
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.4e-204 718.0 1298 47.9
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-202 710.3 1378 50.1
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.4e-201 708.0 1381 48.2
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.9e-201 707.6 1378 51.0
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 2.1e-200 704.1 1574 43.8
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.5e-190 671.4 1388 47.0
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.8e-189 667.2 1406 47.6
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 8.2e-189 665.6 1576 38.7
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 9.0e-188 662.1 1394 48.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.0e-187 661.0 1415 47.3
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.4e-187 660.2 1383 49.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 2.9e-186 657.1 1634 36.8
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.5e-186 655.6 1388 44.8
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.5e-186 655.6 1383 49.2
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.2e-185 653.3 1387 49.1
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 2.1e-184 651.0 1380 47.3
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 7.9e-184 649.0 1384 44.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.0e-183 648.7 1385 49.0
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 3.0e-183 647.1 1381 47.6
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.3e-182 643.7 1379 43.4
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 4.3e-182 643.3 1363 45.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 4.1e-180 636.7 1383 43.5
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 5.3e-180 636.3 1578 42.3
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.1e-177 628.6 1386 49.8
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.4e-177 628.2 1378 44.0
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 7.2e-177 625.9 1388 45.9
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.2e-176 625.2 1384 48.8
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.1e-176 622.9 1387 40.4
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.9e-175 620.2 1384 42.4
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.4e-174 615.9 1382 48.0
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 4.8e-173 613.2 1382 45.9
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 4.5e-171 606.7 1538 42.2
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.0e-170 605.5 1387 45.3
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.0e-170 603.2 1380 45.9
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 3.2e-169 600.5 1384 50.7
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 3.2e-169 600.5 1384 46.8
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 3.2e-169 600.5 1389 41.5
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.4e-166 589.3 1406 45.2
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.4e-166 589.3 1406 45.2
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 5.3e-164 583.2 624 61.2
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 7.7e-163 579.3 1605 38.3
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.1e-161 575.5 1382 41.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.2e-161 573.9 1379 42.2
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.0e-159 568.9 1382 45.3
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.3e-157 562.0 1382 45.4
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 3.7e-157 560.5 1386 49.3
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 5.3e-156 556.6 1577 41.3
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.5e-155 553.9 1381 43.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.0e-154 552.4 1564 39.4
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.7e-152 544.3 777 46.6
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 1.3e-146 525.4 1193 39.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.5e-145 521.2 1395 47.5
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.0e-143 514.2 781 50.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 6.8e-143 513.1 1149 48.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 4.1e-140 503.8 1349 43.7
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.5e-134 485.3 1436 42.0
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.0e-130 471.1 1937 32.8
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 4.3e-129 467.2 1387 40.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 3.7e-125 454.1 1102 35.8
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.6e-120 438.7 1444 35.2
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 9.2e-116 422.9 1382 35.7
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 7.3e-113 413.3 1386 35.4
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 6.4e-101 373.6 1385 38.5
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 4.5e-86 324.3 1396 33.2
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-85 322.8 590 40.3
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 7.9e-83 313.5 1355 29.3
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.8e-82 312.4 1387 34.2
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 7.9e-75 287.0 1381 32.7
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.9e-73 282.3 370 48.9
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 5.0e-69 267.7 546 43.6
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.0e-69 267.7 1248 39.3
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.6e-67 261.5 1384 39.5
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.8e-66 259.2 1000 34.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.3e-64 253.1 1397 32.2
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.1e-59 234.2 331 47.7
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 6.1e-59 234.2 1076 27.0
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 4.4e-57 228.0 1381 38.7
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.4e-55 223.0 621 38.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.4e-54 218.4 1386 40.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.9e-54 217.6 852 30.0
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 3.8e-53 214.9 393 41.7
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.7e-51 208.0 370 41.9
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 8.0e-51 207.2 387 41.3
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.8e-50 206.1 611 33.2
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.5e-49 203.0 286 46.9
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.6e-49 202.2 1474 36.0
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 9.7e-49 200.3 985 42.2
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.4e-47 196.4 1398 33.6
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 9.1e-47 193.7 1381 30.2
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 3.2e-44 185.3 1475 36.1
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 7.2e-44 184.1 1015 31.8
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 4.4e-41 174.9 254 49.2
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 5.7e-41 174.5 1325 24.7
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-40 172.9 417 34.3
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-39 169.9 1466 35.9
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.4e-39 169.9 833 31.7
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.0e-38 166.0 1245 27.4
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 3.5e-38 165.2 623 37.4
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.5e-36 159.8 1241 23.7
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.2e-36 158.3 623 37.2
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.7e-35 155.6 352 38.4
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 8.0e-35 154.1 1389 37.0
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 4.8e-32 144.8 276 40.9
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-31 143.7 1475 36.2
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.4e-31 143.3 1387 27.9
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.4e-31 143.3 306 38.6
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.6e-30 139.8 721 30.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 3.5e-30 138.7 358 34.6
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 7.7e-30 137.5 749 27.5
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 5.0e-29 134.8 1477 34.9
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 5.5e-28 131.3 645 30.7
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-25 123.6 502 28.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-25 123.2 1018 26.9
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-25 123.2 749 27.1
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.5e-25 123.2 749 27.1
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 7.0e-23 114.4 179 46.4
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 2.9e-21 109.0 120 56.7
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 8.6e-21 107.5 477 25.2
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.1e-19 102.8 339 32.2
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 2.3e-18 99.4 353 30.6
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.0e-18 99.0 155 49.7
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 6.8e-18 97.8 89 61.8
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 3.4e-17 95.5 699 25.2
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.9e-16 91.7 885 22.5
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 6.4e-16 91.3 440 24.8
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.4e-15 90.1 759 24.9
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-15 90.1 468 27.1
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.2e-15 89.0 707 28.0
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 4.1e-15 88.6 339 31.9
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 2.0e-14 86.3 113 47.8
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.7e-14 85.9 262 31.7
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 3.5e-14 85.5 873 25.4
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.0e-14 84.7 262 31.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 7.8e-14 84.3 341 32.8
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.3e-13 83.6 185 34.1
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.7e-13 83.2 617 29.2
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.3e-13 82.8 152 39.5
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.6e-13 80.9 177 37.3
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 1.5e-12 80.1 146 38.4
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.3e-12 78.6 393 29.0
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 6.2e-11 74.7 325 30.8
SEGI_34534 Sequoiadendron giganteum HOM05D002721 ORTHO05D002919 6.2e-11 74.7 354 28.2
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 1.5e-09 70.1 57 68.4
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 4.4e-09 68.6 494 23.9
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 9.8e-09 67.4 51 70.6
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.3e-08 67.0 83 48.2
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 4.9e-08 65.1 89 42.7
arahy.Tifrunner.gnm1.ann1.7R6RP5 Arachis hypogaea HOM05D003806 ORTHO05D004346 6.4e-08 64.7 87 52.9
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 8.3e-08 64.3 120 55.8
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 4.1e-07 62.0 106 44.3
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 1.6e-06 60.1 85 48.2
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 2.7e-06 59.3 48 60.4


User provided reference genes

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