Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 1.7e-66 255.8 121 100.0
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 5.9e-59 230.7 108 100.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 4.0e-55 218.0 108 93.5
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 3.5e-43 178.3 112 75.9
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.3e-42 176.4 97 82.5
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.7e-42 176.0 95 83.2
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.5e-41 172.9 106 77.4
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.5e-41 172.9 99 80.8
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 5.5e-41 171.0 97 79.4
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.5e-41 171.0 94 83.0
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 5.5e-41 171.0 104 79.8
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.2e-40 169.9 94 83.0
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.2e-40 169.9 106 76.4
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.1e-40 169.1 102 77.5
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 2.8e-40 168.7 98 78.6
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 4.7e-40 167.9 112 69.6
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 4.7e-40 167.9 102 76.5
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-39 166.4 92 82.6
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.8e-39 166.0 102 76.5
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.8e-39 166.0 106 73.6
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 2.3e-39 165.6 86 88.4
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.2e-38 163.3 98 77.6
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.2e-38 163.3 95 78.9
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.2e-38 163.3 103 76.7
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.0e-38 162.5 100 77.0
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 9.8e-38 160.2 86 86.0
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.7e-37 159.5 96 77.1
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.2e-37 159.1 86 86.0
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.2e-37 159.1 86 86.0
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 2.2e-37 159.1 93 82.8
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.2e-37 159.1 108 70.4
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.8e-37 158.7 99 73.7
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.8e-37 158.7 108 68.5
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 3.7e-37 158.3 91 82.4
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 4.9e-37 157.9 110 71.8
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 6.3e-37 157.5 111 68.5
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 6.3e-37 157.5 86 84.9
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 8.3e-37 157.1 90 78.9
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.1e-36 156.8 93 81.7
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-36 156.4 111 67.6
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.4e-36 156.4 86 83.7
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-36 156.0 86 83.7
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.8e-36 156.0 95 76.8
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.8e-36 156.0 86 82.6
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.4e-36 155.6 106 67.0
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-36 155.6 86 84.9
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 3.1e-36 155.2 86 79.1
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 3.1e-36 155.2 96 77.1
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 4.1e-36 154.8 103 71.8
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 4.1e-36 154.8 113 64.6
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 4.1e-36 154.8 115 65.2
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.1e-36 154.8 115 65.2
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 4.1e-36 154.8 108 70.4
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 5.4e-36 154.5 102 72.5
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 7.0e-36 154.1 103 71.8
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 7.0e-36 154.1 90 78.9
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 9.2e-36 153.7 102 72.5
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 9.2e-36 153.7 101 73.3
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 9.2e-36 153.7 102 73.5
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.2e-35 153.3 111 70.3
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 1.2e-35 153.3 83 85.5
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.6e-35 152.9 90 78.9
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.6e-35 152.9 102 72.5
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.6e-35 152.9 102 71.6
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.6e-35 152.9 87 82.8
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 2.7e-35 152.1 94 75.5
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 2.7e-35 152.1 94 75.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 4.5e-35 151.4 105 71.4
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 4.5e-35 151.4 86 80.2
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 5.9e-35 151.0 92 76.1
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 5.9e-35 151.0 103 68.9
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 5.9e-35 151.0 113 64.6
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.9e-35 151.0 101 70.3
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.9e-35 151.0 101 70.3
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 5.9e-35 151.0 91 78.0
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 5.9e-35 151.0 86 81.4
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 5.9e-35 151.0 101 71.3
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 5.9e-35 151.0 101 71.3
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 7.8e-35 150.6 104 72.1
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 7.8e-35 150.6 89 79.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.3e-34 149.8 111 69.4
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.3e-34 149.8 116 66.4
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 1.3e-34 149.8 90 77.8
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.3e-34 149.8 86 81.4
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.3e-34 149.8 87 80.5
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.3e-34 149.1 105 69.5
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.3e-34 149.1 85 78.8
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.8e-34 148.3 89 74.2
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.8e-34 148.3 101 68.3
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.8e-34 148.3 94 74.5
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 5.0e-34 147.9 92 75.0
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 5.0e-34 147.9 89 76.4
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 5.0e-34 147.9 104 66.3
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 5.0e-34 147.9 122 63.9
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 5.0e-34 147.9 93 75.3
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 5.0e-34 147.9 116 63.8
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 6.6e-34 147.5 87 81.6
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.6e-34 147.5 89 74.2
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 8.6e-34 147.1 83 79.5
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 1.1e-33 146.7 99 69.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.1e-33 146.7 122 63.1
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.9e-33 146.0 93 73.1
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.9e-33 146.0 93 73.1
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.5e-33 145.6 103 69.9
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 3.3e-33 145.2 89 75.3
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 5.6e-33 144.4 89 69.7
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 5.6e-33 144.4 89 69.7
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.2e-32 143.3 124 61.3
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 3.6e-32 141.7 104 64.4
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.6e-32 141.7 118 62.7
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 3.6e-32 141.7 93 73.1
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 6.1e-32 141.0 92 70.7
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.0e-31 140.2 84 75.0
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.0e-31 140.2 79 79.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.0e-31 140.2 98 66.3
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.8e-31 139.4 93 71.0
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.8e-31 139.4 87 71.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.5e-30 136.3 105 62.9
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 3.4e-30 135.2 110 56.4
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 9.8e-30 133.7 76 82.9
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 2.9e-29 132.1 87 72.4
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.3e-29 130.6 97 63.9
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.3e-29 130.6 97 63.9
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.3e-29 130.6 97 63.9
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.3e-29 130.6 97 63.9
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.1e-28 130.2 101 61.4
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.4e-28 129.8 96 64.6
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.8e-28 129.4 111 58.6
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 7.0e-28 127.5 120 53.3
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 9.2e-28 127.1 117 53.0
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.2e-27 126.7 104 57.7
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.6e-27 126.3 106 60.4
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.0e-27 125.9 83 67.5
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.5e-27 125.2 86 67.4
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.8e-27 124.0 119 55.5
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 2.3e-26 122.5 91 65.9
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.9e-26 121.7 72 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.0e-26 121.3 106 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.0e-26 121.3 106 55.7
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 1.2e-24 116.7 87 66.7
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.2e-24 116.7 97 58.8
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.6e-24 116.3 63 85.7
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 2.3e-23 112.5 89 59.6
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 3.1e-23 112.1 103 52.4
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.5e-22 109.8 79 64.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 7.5e-22 107.5 87 55.2
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.3e-21 106.7 101 52.5
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.9e-20 102.8 101 50.5
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.4e-20 102.4 85 58.8
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.5e-17 93.2 61 72.1
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 2.3e-15 85.9 68 61.8
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 5.8e-14 81.3 75 58.7
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 1.2e-11 73.6 41 80.5
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 6.0e-11 71.2 45 75.6
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 9.5e-09 63.9 58 56.9
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 6.2e-08 61.2 37 78.4
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 8.1e-08 60.8 38 76.3
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 1.4e-07 60.1 39 76.9
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.1e-07 58.9 44 65.9
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 4.0e-07 58.5 53 56.6
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 1.5e-06 56.6 40 70.0
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 2.0e-06 56.2 32 78.1


User provided reference genes

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