Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 3298.8 1740 100.0
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.8e-42 178.7 1337 22.5
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 9.1e-36 157.5 1312 22.3
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 6.5e-34 151.4 2052 20.0
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 3.6e-32 145.6 890 22.4
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 3.6e-32 145.6 1484 22.0
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 3.0e-31 142.5 1085 22.9
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 4.0e-31 142.1 2092 20.3
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 5.2e-31 141.7 894 23.6
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 2.0e-30 139.8 1003 22.0
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 5.7e-30 138.3 1309 21.8
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 7.5e-30 137.9 1001 21.8
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 1.3e-29 137.1 893 23.5
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 1.7e-29 136.7 1102 22.2
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 4.8e-29 135.2 2225 20.0
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 2.4e-28 132.9 1082 21.4
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 3.1e-28 132.5 1067 23.1
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 5.4e-28 131.7 1138 22.2
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 1.6e-27 130.2 947 22.4
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.0e-27 129.8 1373 22.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.0e-27 129.8 1030 23.4
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 4.5e-27 128.6 931 22.8
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 1.0e-26 127.5 1087 23.1
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 1.7e-26 126.7 1380 21.7
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 2.3e-26 126.3 942 22.4
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.9e-26 125.9 1382 22.1
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.9e-26 125.9 1086 21.7
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 2.9e-26 125.9 1059 21.9
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.0e-26 125.2 427 26.0
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 6.5e-26 124.8 1094 21.6
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 1.5e-25 123.6 907 21.7
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 1.5e-25 123.6 966 21.4
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 1.9e-25 123.2 1074 21.3
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.9e-25 123.2 1322 21.3
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 2.5e-25 122.9 1092 22.0
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 3.3e-25 122.5 974 20.6
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 4.2e-25 122.1 1099 21.6
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.5e-25 121.7 1064 21.0
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 5.5e-25 121.7 882 22.0
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 5.5e-25 121.7 1280 20.9
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 1.2e-24 120.6 988 21.2
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 1.2e-24 120.6 890 21.5
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 1.2e-24 120.6 1326 21.3
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 1.6e-24 120.2 1072 20.5
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 2.1e-24 119.8 1328 21.8
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 2.1e-24 119.8 1072 21.3
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 2.8e-24 119.4 1080 21.6
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.8e-24 119.4 955 22.2
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 4.7e-24 118.6 1082 21.3
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 6.1e-24 118.2 1037 20.9
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.0e-23 117.5 381 27.3
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 1.4e-23 117.1 968 20.6
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 1.8e-23 116.7 1037 20.7
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 2.3e-23 116.3 941 22.1
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 2.3e-23 116.3 1005 21.8
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 4.0e-23 115.5 1085 21.3
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 4.0e-23 115.5 940 20.4
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 4.0e-23 115.5 884 23.3
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 5.2e-23 115.2 1041 21.0
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 5.2e-23 115.2 891 21.7
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 5.2e-23 115.2 1356 21.5
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 6.8e-23 114.8 731 22.6
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 6.8e-23 114.8 347 26.2
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 6.8e-23 114.8 1102 23.2
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 8.9e-23 114.4 1316 20.8
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 1.2e-22 114.0 1081 21.5
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 1.5e-22 113.6 1080 22.4
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 1.5e-22 113.6 1336 21.3
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 4.4e-22 112.1 1389 22.2
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 9.8e-22 110.9 954 22.4
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 1.7e-21 110.2 347 24.5
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 1.7e-21 110.2 366 25.7
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.8e-21 109.4 1068 21.8
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 3.7e-21 109.0 349 25.2
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 4.9e-21 108.6 363 25.1
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 4.9e-21 108.6 1083 20.8
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 4.9e-21 108.6 342 26.3
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 6.3e-21 108.2 309 26.5
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 8.3e-21 107.8 410 24.6
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 8.3e-21 107.8 370 25.7
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.1e-20 107.5 907 21.8
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 1.1e-20 107.5 1352 20.6
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 1.8e-20 106.7 1326 21.3
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 1.8e-20 106.7 347 24.8
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-20 106.7 390 25.4
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 1.8e-20 106.7 408 23.5
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 2.4e-20 106.3 1331 20.4
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 2.4e-20 106.3 1078 20.9
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 2.4e-20 106.3 1355 21.1
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 3.1e-20 105.9 415 25.1
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.1e-20 105.9 393 25.2
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 4.1e-20 105.5 1330 20.5
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 4.1e-20 105.5 543 24.5
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 4.1e-20 105.5 1039 21.7
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.1e-20 105.5 415 25.1
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.1e-20 105.5 197 33.0
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.4e-20 105.1 414 24.9
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 5.4e-20 105.1 380 25.0
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 7.0e-20 104.8 349 24.6
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 1.2e-19 104.0 375 24.0
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 2.0e-19 103.2 1017 21.9
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.0e-19 103.2 375 24.0
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 2.0e-19 103.2 342 24.3
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 4.5e-19 102.1 1356 20.9
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 2.3e-18 99.8 1292 21.4
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 2.9e-18 99.4 371 24.3
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 3.8e-18 99.0 436 23.2
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 5.0e-18 98.6 359 26.7
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 1.5e-17 97.1 379 25.1
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.5e-17 96.3 277 26.0
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 3.3e-17 95.9 409 24.4
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 4.3e-17 95.5 220 29.5
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 5.6e-17 95.1 388 23.7
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 7.3e-17 94.7 333 24.3
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.8e-16 92.8 526 21.7
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 3.6e-16 92.4 412 22.8
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 4.7e-16 92.0 295 24.1
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 8.0e-16 91.3 342 23.7
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 5.8e-14 85.1 194 28.9
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 7.5e-14 84.7 294 23.5
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 5.4e-12 78.6 1092 19.5
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.2e-12 77.8 364 23.4
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.2e-11 77.4 342 21.3
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.6e-08 67.0 227 24.7
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 4.4e-06 58.9 137 28.5


User provided reference genes

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