Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023234 Carpinus fangiana HOM05D006348 ORTHO05D121491 0.0e+00 1215.3 636 100.0
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 2.1e-14 85.1 205 32.2
Rhsim03G0004700 Rhododendron simsii HOM05D002008 ORTHO05D002054 2.8e-11 74.7 182 29.7
TAR633G0191 Trochodendron aralioides HOM05D002008 ORTHO05D002054 6.3e-11 73.6 156 30.8
CiPaw.03G157500 Carya illinoinensis HOM05D006348 ORTHO05D008261 8.3e-11 73.2 136 35.3
Gorai.006G265900 Gossypium raimondii HOM05D002008 ORTHO05D002054 8.3e-11 73.2 159 32.7
BcaC07g41160 Brassica carinata HOM05D002008 ORTHO05D002054 1.1e-10 72.8 189 29.6
C08p41680 Brassica napus HOM05D002008 ORTHO05D002054 1.1e-10 72.8 189 29.6
BolC8t51731H Brassica oleracea HOM05D002008 ORTHO05D002054 1.1e-10 72.8 189 29.6
Haze_12795 Corylus avellana HOM05D006348 ORTHO05D008261 1.1e-10 72.8 136 35.3
Cfa014336 Carpinus fangiana HOM05D006348 ORTHO05D008261 1.4e-10 72.4 136 35.3
Sp4g00460 Schrenkiella parvula HOM05D002008 ORTHO05D002054 1.8e-10 72.0 228 28.5
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 2.4e-10 71.6 145 33.8
Thhalv10000246m.g Eutrema salsugineum HOM05D002008 ORTHO05D002054 2.4e-10 71.6 188 29.3
Gohir.A09G241550 Gossypium hirsutum HOM05D002008 ORTHO05D002054 2.4e-10 71.6 159 32.1
C04p50510 Brassica napus HOM05D002008 ORTHO05D002054 3.1e-10 71.2 189 28.6
BolC4t26649H Brassica oleracea HOM05D002008 ORTHO05D002054 3.1e-10 71.2 189 28.6
QL08p031358 Quercus lobata HOM05D006348 ORTHO05D008261 3.1e-10 71.2 136 35.3
CARHR112140 Cardamine hirsuta HOM05D002008 ORTHO05D002054 4.1e-10 70.9 188 29.3
PGR042G0134 Punica granatum HOM05D006348 ORTHO05D008261 4.1e-10 70.9 145 30.3
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 5.4e-10 70.5 148 32.4
A04p16050 Brassica napus HOM05D002008 ORTHO05D002054 5.4e-10 70.5 189 28.6
Migut.D02074 Erythranthe guttata HOM05D002008 ORTHO05D002054 5.4e-10 70.5 158 30.4
Sp7g36910 Schrenkiella parvula HOM05D002008 ORTHO05D002054 5.4e-10 70.5 221 28.1
A09p58340 Brassica napus HOM05D002008 ORTHO05D002054 7.0e-10 70.1 189 29.1
BraA09t41225Z Brassica rapa HOM05D002008 ORTHO05D002054 7.0e-10 70.1 189 29.1
Carub.0004s0031 Capsella rubella HOM05D002008 ORTHO05D002054 7.0e-10 70.1 188 28.7
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 7.0e-10 70.1 178 28.7
Nitab4.5_0004358g0010 Nicotiana tabacum HOM05D006348 ORTHO05D008261 7.0e-10 70.1 135 32.6
TWI36G0479 Tripterygium wilfordii HOM05D006348 ORTHO05D008261 7.0e-10 70.1 162 30.9
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 9.1e-10 69.7 133 34.6
BcaB08g34978 Brassica carinata HOM05D002008 ORTHO05D002054 1.2e-09 69.3 188 28.7
BcaC02g08803 Brassica carinata HOM05D002008 ORTHO05D002054 1.2e-09 69.3 156 30.8
BraA04t17245Z Brassica rapa HOM05D002008 ORTHO05D002054 1.2e-09 69.3 156 30.8
Ca_06123_v3 Cicer arietinum L. HOM05D006348 ORTHO05D008261 1.2e-09 69.3 137 33.6
PRCOL_00005657 Prasinoderma coloniale HOM05D002008 ORTHO05D002054 1.2e-09 69.3 156 31.4
vmacro07892 Vaccinium macrocarpon HOM05D002008 ORTHO05D002054 1.2e-09 69.3 158 31.0
Actinidia10810 Actinidia chinensis HOM05D006348 ORTHO05D008261 1.6e-09 68.9 132 36.4
Aa31LG6G16310 Aethionema arabicum HOM05D002008 ORTHO05D002054 1.6e-09 68.9 186 28.5
AL4G10410 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 1.6e-09 68.9 188 28.2
Cc05_g03430 Coffea canephora HOM05D006348 ORTHO05D008261 1.6e-09 68.9 135 34.8
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 2.0e-09 68.6 137 34.3
AT2G21270 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 2.7e-09 68.2 188 28.2
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 2.7e-09 68.2 133 32.3
Glyma.14G046100 Glycine max HOM05D006348 ORTHO05D008261 2.7e-09 68.2 134 32.8
Sed0018470 Sechium edule HOM05D006348 ORTHO05D008261 2.7e-09 68.2 133 33.8
Aa31LG7G15220 Aethionema arabicum HOM05D002008 ORTHO05D002054 3.5e-09 67.8 156 30.8
Glyma.02G271100 Glycine max HOM05D006348 ORTHO05D008261 3.5e-09 67.8 135 33.3
LjContig00564g0027462 Lotus japonicus HOM05D006348 ORTHO05D008261 3.5e-09 67.8 130 32.3
VMungo0647G0907 Vigna mungo HOM05D006348 ORTHO05D008261 3.5e-09 67.8 139 30.2
Cre14.g613350 Chlamydomonas reinhardtii HOM05D002008 ORTHO05D002054 4.5e-09 67.4 159 29.6
CsaV3_7G003400 Cucumis sativus L. HOM05D006348 ORTHO05D008261 4.5e-09 67.4 133 33.1
FAN02G0418 Fragaria x ananassa HOM05D006348 ORTHO05D008261 4.5e-09 67.4 136 32.4
Mapoly0005s0132 Marchantia polymorpha HOM05D006348 ORTHO05D008261 4.5e-09 67.4 205 26.8
Nitab4.5_0004215g0010 Nicotiana tabacum HOM05D006348 ORTHO05D008261 4.5e-09 67.4 135 31.9
Os01g0144500 Oryza sativa ssp. japonica HOM05D002008 ORTHO05D002054 4.5e-09 67.4 149 30.2
Sopen07g024550 Solanum pennellii HOM05D006348 ORTHO05D008261 4.5e-09 67.4 135 32.6
TWI18G0943 Tripterygium wilfordii HOM05D006348 ORTHO05D008261 4.5e-09 67.4 133 34.6
AT4G38930 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 5.9e-09 67.0 156 30.8
CSS0029476 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 5.9e-09 67.0 133 36.1
MD17G1101600 Malus domestica HOM05D006348 ORTHO05D008261 5.9e-09 67.0 150 32.0
Peaxi162Scf00016g00033 Petunia axillaris HOM05D002008 ORTHO05D002054 5.9e-09 67.0 185 29.7
THA.LOC104824790 Tarenaya hassleriana HOM05D002008 ORTHO05D002054 5.9e-09 67.0 156 30.1
TPR.G31828 Trifolium pratense HOM05D006348 ORTHO05D008261 5.9e-09 67.0 130 33.8
Aqoxy1G00913 Aquilegia oxysepala HOM05D002008 ORTHO05D002054 7.7e-09 66.6 156 31.4
AL4G23640 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 7.7e-09 66.6 190 25.8
CSS0003775 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 7.7e-09 66.6 158 34.2
CSS0037472 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 7.7e-09 66.6 158 34.2
Hma1.2p1_0895F.1_g233740 Hydrangea macrophylla HOM05D006348 ORTHO05D008261 7.7e-09 66.6 135 34.1
TWI79G0712 Tripterygium wilfordii HOM05D002008 ORTHO05D002054 7.7e-09 66.6 156 30.1
HPP92_018241 Vanilla planifolia HOM05D002008 ORTHO05D002054 7.7e-09 66.6 179 29.6
arahy.Tifrunner.gnm1.ann1.ZG31ZK Arachis hypogaea HOM05D006348 ORTHO05D008261 1.0e-08 66.2 140 32.1
Carub.0004s1007 Capsella rubella HOM05D002008 ORTHO05D002054 1.0e-08 66.2 190 26.8
Prupe.3G213300 Prunus persica HOM05D006348 ORTHO05D008261 1.0e-08 66.2 170 29.4
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 1.3e-08 65.9 136 33.8
AL7G10830 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 1.3e-08 65.9 191 28.8
Lalb_Chr03g0026521 Lupinus albus HOM05D002008 ORTHO05D002054 1.3e-08 65.9 192 26.0
Sp4g11890 Schrenkiella parvula HOM05D002008 ORTHO05D002054 1.3e-08 65.9 190 26.3
Zm00001eb073360 Zea mays HOM05D002008 ORTHO05D002054 1.3e-08 65.9 182 29.1
arahy.Tifrunner.gnm1.ann1.156AYJ Arachis hypogaea HOM05D006348 ORTHO05D008261 1.7e-08 65.5 140 31.4
Sabra08G0056800 Salix brachista HOM05D002008 ORTHO05D002054 1.7e-08 65.5 198 26.3
HPP92_010602 Vanilla planifolia HOM05D002008 ORTHO05D002054 1.7e-08 65.5 189 25.9
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 2.3e-08 65.1 145 33.8
Phvul.008G210900 Phaseolus vulgaris HOM05D006348 ORTHO05D008261 2.3e-08 65.1 139 30.9
TPR.G23590 Trifolium pratense HOM05D002008 ORTHO05D002054 2.3e-08 65.1 156 26.9
CAN.G1911.1 Capsicum annuum HOM05D006348 ORTHO05D008261 2.9e-08 64.7 136 33.1
Cfa020148 Carpinus fangiana HOM05D002008 ORTHO05D002054 2.9e-08 64.7 156 28.8
DCAR_021152 Daucus carota HOM05D006348 ORTHO05D008261 2.9e-08 64.7 135 32.6
Duzib248G1510 Durio zibethinus HOM05D002008 ORTHO05D002054 2.9e-08 64.7 156 30.1
Peaxi162Scf00921g00016 Petunia axillaris HOM05D006348 ORTHO05D008261 2.9e-08 64.7 133 31.6
Rhsim13G0078700 Rhododendron simsii HOM05D002008 ORTHO05D002054 2.9e-08 64.7 186 26.9
vmacro03046 Vaccinium macrocarpon HOM05D002008 ORTHO05D002054 2.9e-08 64.7 158 30.4
FvH4_6g42660 Fragaria vesca HOM05D006348 ORTHO05D008261 3.8e-08 64.3 136 31.6
FAN14G5544 Fragaria x ananassa HOM05D006348 ORTHO05D008261 3.8e-08 64.3 136 31.6
Gohir.A12G040900 Gossypium hirsutum HOM05D002008 ORTHO05D002054 3.8e-08 64.3 156 30.1
Gohir.D12G031500 Gossypium hirsutum HOM05D002008 ORTHO05D002054 3.8e-08 64.3 156 30.1
Gorai.008G032200 Gossypium raimondii HOM05D002008 ORTHO05D002054 3.8e-08 64.3 156 30.1
Medtr4g064300 Medicago truncatula HOM05D002008 ORTHO05D002054 3.8e-08 64.3 199 27.6
Os04g0577000 Oryza sativa ssp. japonica HOM05D002008 ORTHO05D002054 3.8e-08 64.3 156 30.8
Solyc07g048120.3 Solanum lycopersicum HOM05D006348 ORTHO05D008261 3.8e-08 64.3 135 31.9
TAR624G0809 Trochodendron aralioides HOM05D006348 ORTHO05D008261 3.8e-08 64.3 144 31.2
HanXRQChr14g0458361 Helianthus annuus HOM05D002008 ORTHO05D002054 5.0e-08 63.9 174 27.6
ATR0824G275 Amborella trichopoda HOM05D002008 ORTHO05D002054 6.5e-08 63.5 169 26.0
AT2G29070 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 6.5e-08 63.5 190 24.7
EL10Ac3g06889 Beta vulgaris HOM05D002008 ORTHO05D002054 6.5e-08 63.5 144 27.1
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 6.5e-08 63.5 131 32.8
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 6.5e-08 63.5 135 31.9
Ah.12g055590 Amaranthus hybridus HOM05D006348 ORTHO05D008261 8.6e-08 63.2 136 30.1
MSTRG.14145 Avicennia marina HOM05D006348 ORTHO05D008261 8.6e-08 63.2 156 30.8
CiPaw.04G045900 Carya illinoinensis HOM05D002008 ORTHO05D002054 8.6e-08 63.2 171 28.7
Lj3g0026091 Lotus japonicus HOM05D002008 ORTHO05D002054 8.6e-08 63.2 178 28.1
Oeu036738.2 Olea europaea HOM05D006348 ORTHO05D008261 8.6e-08 63.2 141 33.3
Phvul.004G107800 Phaseolus vulgaris HOM05D002008 ORTHO05D002054 8.6e-08 63.2 161 26.1
FAN09G4439 Fragaria x ananassa HOM05D006348 ORTHO05D008261 1.1e-07 62.8 136 30.9
Glyma.12G061700 Glycine max HOM05D002008 ORTHO05D002054 1.1e-07 62.8 158 29.7
MBI10_g09181_MAGBIO Magnolia biondii HOM05D006348 ORTHO05D008261 1.1e-07 62.8 135 32.6
RcHm_v2.0_Chr2g0158561 Rosa chinensis HOM05D006348 ORTHO05D008261 1.1e-07 62.8 133 32.3
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 1.1e-07 62.8 136 32.4
HPP92_008160 Vanilla planifolia HOM05D006348 ORTHO05D008261 1.1e-07 62.8 134 33.6
Migut.H00388 Erythranthe guttata HOM05D002008 ORTHO05D002054 1.5e-07 62.4 151 29.1
Rhsim04G0052100 Rhododendron simsii HOM05D006348 ORTHO05D008261 1.5e-07 62.4 157 31.2
SMO367G0177 Selaginella moellendorffii HOM05D002008 ORTHO05D002054 1.5e-07 62.4 156 28.8
Duzib170G0425 Durio zibethinus HOM05D002008 ORTHO05D002054 1.9e-07 62.0 156 29.5
Hund11167 Selenicereus undatus HOM05D006348 ORTHO05D008261 1.9e-07 62.0 170 29.4
Lj8C128T10 Lonicera japonica HOM05D006348 ORTHO05D008261 2.5e-07 61.6 152 30.9
Lalb_Chr17g0347351 Lupinus albus HOM05D006348 ORTHO05D008261 2.5e-07 61.6 137 30.7
VMungo1309G2058 Vigna mungo HOM05D002008 ORTHO05D002054 2.5e-07 61.6 158 29.7
Aa31LG9G2030 Aethionema arabicum HOM05D006348 ORTHO05D008261 3.3e-07 61.2 130 30.0
COL.COLO4_29596 Corchorus olitorius HOM05D002008 ORTHO05D002054 4.2e-07 60.8 200 26.0
Haze_20014 Corylus avellana HOM05D002008 ORTHO05D002054 7.2e-07 60.1 148 27.0
PSO541G1617 Papaver somniferum HOM05D006348 ORTHO05D008261 7.2e-07 60.1 145 29.7
PSO675G6007 Papaver somniferum HOM05D006348 ORTHO05D008261 7.2e-07 60.1 145 29.7
Rhsim03G0004800 Rhododendron simsii HOM05D002008 ORTHO05D002054 7.2e-07 60.1 235 27.2
Ciclev10013581m.g Citrus clementina HOM05D002008 ORTHO05D002054 9.5e-07 59.7 165 27.3
Manes.13G068300 Manihot esculenta HOM05D006348 ORTHO05D008261 9.5e-07 59.7 130 30.8
DCAR_019853 Daucus carota HOM05D002008 ORTHO05D002054 1.2e-06 59.3 161 27.3
Medtr4g064330 Medicago truncatula HOM05D002008 ORTHO05D002054 1.2e-06 59.3 209 25.4
arahy.Tifrunner.gnm1.ann1.F1N93U Arachis hypogaea HOM05D002008 ORTHO05D002054 2.1e-06 58.5 175 24.6
Migut.H01230 Erythranthe guttata HOM05D006348 ORTHO05D008261 2.1e-06 58.5 145 29.7
arahy.Tifrunner.gnm1.ann1.FM8KFZ Arachis hypogaea HOM05D002008 ORTHO05D002054 2.8e-06 58.2 145 25.5
arahy.Tifrunner.gnm1.ann1.RF5AXZ Arachis hypogaea HOM05D002008 ORTHO05D002054 2.8e-06 58.2 145 25.5
TPR.G23620 Trifolium pratense HOM05D002008 ORTHO05D002054 3.6e-06 57.8 274 22.6


User provided reference genes

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