Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022955 Carpinus fangiana HOM05D000122 ORTHO05D000139 4.0e-30 134.0 65 100.0
Haze_07492 Corylus avellana HOM05D000122 ORTHO05D000139 6.9e-14 80.1 46 84.8
Cfa019094 Carpinus fangiana HOM05D000122 ORTHO05D000139 9.0e-14 79.7 46 82.6
Thhalv10012806m.g Eutrema salsugineum HOM05D000122 ORTHO05D000139 3.5e-10 67.8 45 68.9
Nn3g16916 Nelumbo nucifera HOM05D000122 ORTHO05D000139 4.6e-10 67.4 45 68.9
CANSAT80G1276 Cannabis sativa HOM05D000122 ORTHO05D000139 6.1e-10 67.0 46 65.2
TWI15G0961 Tripterygium wilfordii HOM05D000122 ORTHO05D000139 6.1e-10 67.0 46 71.7
QL10p012174 Quercus lobata HOM05D000122 ORTHO05D000139 1.0e-09 66.2 46 65.2
Sp6g29210 Schrenkiella parvula HOM05D000122 ORTHO05D000139 1.0e-09 66.2 45 68.9
Cpa.g.sc140.41 Carica papaya HOM05D000122 ORTHO05D000139 1.3e-09 65.9 45 68.9
Gohir.A09G169600 Gossypium hirsutum HOM05D000122 ORTHO05D000139 2.3e-09 65.1 46 63.0
Gohir.D09G165300 Gossypium hirsutum HOM05D000122 ORTHO05D000139 2.3e-09 65.1 46 63.0
Gorai.006G187100 Gossypium raimondii HOM05D000122 ORTHO05D000139 2.3e-09 65.1 46 63.0
HPP92_019374 Vanilla planifolia HOM05D000122 ORTHO05D000139 2.3e-09 65.1 45 64.4
TAR374G0952 Trochodendron aralioides HOM05D000122 ORTHO05D000139 3.0e-09 64.7 45 62.2
BcaC04g19005 Brassica carinata HOM05D000122 ORTHO05D000139 3.9e-09 64.3 45 64.4
A10p23860 Brassica napus HOM05D000122 ORTHO05D000139 3.9e-09 64.3 45 64.4
C09p62340 Brassica napus HOM05D000122 ORTHO05D000139 3.9e-09 64.3 45 64.4
BolC9t59071H Brassica oleracea HOM05D000122 ORTHO05D000139 3.9e-09 64.3 45 64.4
BraA10t44450Z Brassica rapa HOM05D000122 ORTHO05D000139 3.9e-09 64.3 45 64.4
Thecc.03G009200 Theobroma cacao HOM05D000122 ORTHO05D000139 3.9e-09 64.3 46 60.9
AL6G25640 Arabidopsis lyrata HOM05D000122 ORTHO05D000139 5.1e-09 63.9 45 64.4
Dinv33506 Davidia involucrata HOM05D000122 ORTHO05D000139 5.1e-09 63.9 45 71.1
BcaB08g36943 Brassica carinata HOM05D000122 ORTHO05D000139 6.7e-09 63.5 45 62.2
Carub.0006s1302 Capsella rubella HOM05D000122 ORTHO05D000139 6.7e-09 63.5 45 62.2
AT5G14870 Arabidopsis thaliana HOM05D000122 ORTHO05D000139 8.7e-09 63.2 45 64.4
PGR083G1525 Punica granatum HOM05D000122 ORTHO05D000139 1.1e-08 62.8 46 63.0
Rhsim10G0023400 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.1e-08 62.8 45 66.7
Rhsim10G0023800 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.1e-08 62.8 45 66.7
GSVIVG01007785001 Vitis vinifera HOM05D000122 ORTHO05D000139 1.1e-08 62.8 46 60.9
Duzib084G1280 Durio zibethinus HOM05D000122 ORTHO05D000139 1.5e-08 62.4 46 60.9
GSVIVG01032502001 Vitis vinifera HOM05D000122 ORTHO05D000139 1.5e-08 62.4 45 64.4
Dinv09160 Davidia involucrata HOM05D000122 ORTHO05D000139 1.9e-08 62.0 45 68.9
THA.LOC104821065 Tarenaya hassleriana HOM05D000122 ORTHO05D000139 1.9e-08 62.0 45 64.4
Aa31LG10G9170 Aethionema arabicum HOM05D000122 ORTHO05D000139 2.5e-08 61.6 45 62.2
Medtr7g034605 Medicago truncatula HOM05D000122 ORTHO05D000139 2.5e-08 61.6 45 62.2
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 3.3e-08 61.2 45 64.4
Potri.017G067000 Populus trichocarpa HOM05D000122 ORTHO05D000139 7.4e-08 60.1 46 63.0
TAR371G1161 Trochodendron aralioides HOM05D000122 ORTHO05D000139 7.4e-08 60.1 45 60.0
Glyma.04G181000 Glycine max HOM05D000122 ORTHO05D000139 9.7e-08 59.7 43 67.4
Hma1.2p1_0967F.1_g242280 Hydrangea macrophylla HOM05D000122 ORTHO05D000139 9.7e-08 59.7 45 60.0
vmacro05813 Vaccinium macrocarpon HOM05D000122 ORTHO05D000139 9.7e-08 59.7 45 64.4
VMungo1309G2890 Vigna mungo HOM05D000122 ORTHO05D000139 9.7e-08 59.7 46 63.0
Glyma.06G184000 Glycine max HOM05D000122 ORTHO05D000139 1.3e-07 59.3 43 65.1
PGR083G1066 Punica granatum HOM05D000122 ORTHO05D000139 1.3e-07 59.3 46 54.3
CARHR198480 Cardamine hirsuta HOM05D000122 ORTHO05D000139 1.6e-07 58.9 45 60.0
CDE04G3190 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 1.6e-07 58.9 44 59.1
Lalb_Chr08g0236391 Lupinus albus HOM05D000122 ORTHO05D000139 1.6e-07 58.9 46 63.0
TWI56G0832 Tripterygium wilfordii HOM05D000122 ORTHO05D000139 1.6e-07 58.9 44 65.9
ClCG10G014350 Citrullus lanatus HOM05D000122 ORTHO05D000139 2.2e-07 58.5 45 62.2
Eucgr.J02184 Eucalyptus grandis HOM05D000122 ORTHO05D000139 2.2e-07 58.5 45 62.2
Nn4g22823 Nelumbo nucifera HOM05D000122 ORTHO05D000139 2.2e-07 58.5 45 55.6
Sabra17G0062800 Salix brachista HOM05D000122 ORTHO05D000139 2.2e-07 58.5 46 63.0
vmacro19371 Vaccinium macrocarpon HOM05D000122 ORTHO05D000139 2.2e-07 58.5 46 60.9
CSS0043516 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D000139 2.8e-07 58.2 45 62.2
MELO3C009944.2 Cucumis melo HOM05D000122 ORTHO05D000139 2.8e-07 58.2 45 62.2
CsaV3_3G042240 Cucumis sativus L. HOM05D000122 ORTHO05D000139 2.8e-07 58.2 45 62.2
Eucgr.B00356 Eucalyptus grandis HOM05D000122 ORTHO05D000139 2.8e-07 58.2 46 56.5
Manes.07G063500 Manihot esculenta HOM05D000122 ORTHO05D000139 2.8e-07 58.2 46 54.3
Glyma.06G077300 Glycine max HOM05D000122 ORTHO05D000139 3.7e-07 57.8 45 55.6
Lalb_Chr04g0259351 Lupinus albus HOM05D000122 ORTHO05D000139 4.8e-07 57.4 45 57.8
Psat3g006200 Pisum sativum HOM05D000122 ORTHO05D000139 4.8e-07 57.4 45 57.8
CSS0032649 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D000139 6.3e-07 57.0 45 62.2
Lj1g0022232 Lotus japonicus HOM05D000122 ORTHO05D000139 6.3e-07 57.0 43 62.8
Phvul.008G152000 Phaseolus vulgaris HOM05D000122 ORTHO05D000139 6.3e-07 57.0 45 55.6
VMungo1383G0917 Vigna mungo HOM05D000122 ORTHO05D000139 6.3e-07 57.0 45 55.6
Atru.chr6.2187 Acer truncatum HOM05D000122 ORTHO05D000139 8.2e-07 56.6 45 60.0
Cpa.g.c39659 Carica papaya HOM05D000122 ORTHO05D000139 8.2e-07 56.6 46 58.7
Phvul.009G180000 Phaseolus vulgaris HOM05D000122 ORTHO05D000139 8.2e-07 56.6 46 58.7
Prupe.5G176000 Prunus persica HOM05D000122 ORTHO05D000139 8.2e-07 56.6 45 55.6
CANSAT64G2997 Cannabis sativa HOM05D000122 ORTHO05D000139 1.1e-06 56.2 45 60.0
Ca_23257_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 1.1e-06 56.2 45 57.8
Rhsim08G0170300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.1e-06 56.2 46 60.9
SHI07775 Sapria himalayana HOM05D000122 ORTHO05D000139 1.1e-06 56.2 46 52.2
QL02p076980 Quercus lobata HOM05D000122 ORTHO05D000139 1.4e-06 55.8 45 53.3
ClCG06G016900 Citrullus lanatus HOM05D000122 ORTHO05D000139 1.8e-06 55.5 46 54.3
Duzib264G0783 Durio zibethinus HOM05D000122 ORTHO05D000139 1.8e-06 55.5 45 51.1
TPR.G356 Trifolium pratense HOM05D000122 ORTHO05D000139 1.8e-06 55.5 45 55.6
arahy.Tifrunner.gnm1.ann1.H5JTNM Arachis hypogaea HOM05D000122 ORTHO05D000139 2.4e-06 55.1 42 64.3
arahy.Tifrunner.gnm1.ann1.ZP1E81 Arachis hypogaea HOM05D000122 ORTHO05D000139 2.4e-06 55.1 42 64.3
Lj1g0004395 Lotus japonicus HOM05D000122 ORTHO05D000139 2.4e-06 55.1 45 55.6
MD14G1183500 Malus domestica HOM05D000122 ORTHO05D000139 2.4e-06 55.1 37 59.5
Sed0011197 Sechium edule HOM05D000122 ORTHO05D000139 2.4e-06 55.1 46 52.2
arahy.Tifrunner.gnm1.ann1.A958VF Arachis hypogaea HOM05D000122 ORTHO05D000139 3.1e-06 54.7 45 53.3
arahy.Tifrunner.gnm1.ann1.VR06A8 Arachis hypogaea HOM05D000122 ORTHO05D000139 3.1e-06 54.7 45 53.3
Gohir.A05G360100 Gossypium hirsutum HOM05D000122 ORTHO05D000139 3.1e-06 54.7 45 53.3
Gohir.D04G054200 Gossypium hirsutum HOM05D000122 ORTHO05D000139 3.1e-06 54.7 45 53.3
Gorai.012G060800 Gossypium raimondii HOM05D000122 ORTHO05D000139 3.1e-06 54.7 45 53.3
Thecc.04G007400 Theobroma cacao HOM05D000122 ORTHO05D000139 3.1e-06 54.7 45 55.6
TAR383G0574 Trochodendron aralioides HOM05D000122 ORTHO05D000139 3.1e-06 54.7 44 54.5
Atru.chr9.2442 Acer truncatum HOM05D000122 ORTHO05D000139 4.1e-06 54.3 46 54.3
DCAR_021677 Daucus carota HOM05D000122 ORTHO05D000139 4.1e-06 54.3 45 57.8
RcHm_v2.0_Chr2g0170931 Rosa chinensis HOM05D000122 ORTHO05D000139 4.1e-06 54.3 45 53.3
ATR0691G060 Amborella trichopoda HOM05D000122 ORTHO05D000139 5.3e-06 53.9 45 55.6
CiPaw.03G036700 Carya illinoinensis HOM05D000122 ORTHO05D000139 5.3e-06 53.9 45 48.9
Migut.H00137 Erythranthe guttata HOM05D000122 ORTHO05D000139 5.3e-06 53.9 47 51.1
Lalb_Chr08g0243501 Lupinus albus HOM05D000122 ORTHO05D000139 5.3e-06 53.9 44 54.5
MBI15_g31110_MAGBIO Magnolia biondii HOM05D000122 ORTHO05D000139 5.3e-06 53.9 40 62.5
Oeu018554.2 Olea europaea HOM05D000122 ORTHO05D000139 5.3e-06 53.9 44 54.5
CANSAT25G1233 Cannabis sativa HOM05D000122 ORTHO05D000139 6.9e-06 53.5 46 52.2
Cfa007441 Carpinus fangiana HOM05D000122 ORTHO05D000139 6.9e-06 53.5 45 55.6
TPR.G6324 Trifolium pratense HOM05D000122 ORTHO05D000139 6.9e-06 53.5 41 63.4
CsaV3_1G001610 Cucumis sativus L. HOM05D000122 ORTHO05D000139 9.0e-06 53.1 46 54.3
FvH4_4g09800 Fragaria vesca HOM05D000122 ORTHO05D000139 9.0e-06 53.1 44 52.3
FAN12G3253 Fragaria x ananassa HOM05D000122 ORTHO05D000139 9.0e-06 53.1 44 52.3
FAN17G0224 Fragaria x ananassa HOM05D000122 ORTHO05D000139 9.0e-06 53.1 44 52.3
FAN22G0894 Fragaria x ananassa HOM05D000122 ORTHO05D000139 9.0e-06 53.1 44 52.3
Lj6g0014361 Lotus japonicus HOM05D000122 ORTHO05D000139 9.0e-06 53.1 41 53.7
MD06G1177300 Malus domestica HOM05D000122 ORTHO05D000139 9.0e-06 53.1 37 56.8
THA.LOC104818228 Tarenaya hassleriana HOM05D000122 ORTHO05D000139 9.0e-06 53.1 41 58.5


User provided reference genes

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