Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 4.5e-129 464.5 226 100.0
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 2.3e-109 399.1 226 83.6
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 4.4e-108 394.8 226 84.1
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 5.8e-108 394.4 226 83.6
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.9e-107 391.3 226 84.1
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 6.4e-107 391.0 226 84.1
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.4e-106 389.0 226 83.6
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.2e-106 388.7 225 83.6
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 3.2e-106 388.7 225 82.2
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.1e-106 388.3 225 84.0
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 9.2e-106 387.1 226 80.1
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 1.6e-105 386.3 226 80.5
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 7.8e-105 384.0 224 81.7
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 2.3e-104 382.5 224 81.7
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 3.9e-104 381.7 224 79.9
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 8.6e-104 380.6 229 80.8
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.1e-103 380.2 225 79.1
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.1e-103 380.2 226 80.1
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 3.6e-102 375.2 225 79.1
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 8.1e-102 374.0 224 79.5
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 1.1e-101 373.6 226 79.6
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 5.2e-101 371.3 226 77.4
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 8.9e-101 370.5 226 79.2
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 1.5e-100 369.8 224 78.6
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.0e-100 369.4 226 77.0
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 3.4e-100 368.6 225 76.4
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 2.9e-99 365.5 221 77.8
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 1.4e-98 363.2 224 75.4
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 4.1e-98 361.7 221 77.8
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 4.1e-98 361.7 226 77.0
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 4.1e-98 361.7 226 77.0
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 5.4e-98 361.3 222 74.8
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 9.2e-98 360.5 226 76.5
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 9.2e-98 360.5 226 75.2
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.2e-97 360.1 221 78.3
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.7e-97 359.0 224 74.6
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.6e-97 358.2 224 75.0
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 7.8e-97 357.5 223 75.3
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 1.0e-96 357.1 222 74.8
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 5.1e-96 354.8 214 78.5
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 8.6e-96 354.0 221 76.0
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.1e-95 353.6 226 73.0
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 1.5e-95 353.2 221 75.1
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 1.5e-95 353.2 223 74.0
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 1.9e-95 352.8 226 72.1
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 3.3e-95 352.1 221 74.7
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 5.6e-95 351.3 214 77.6
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 5.6e-95 351.3 221 75.6
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 5.6e-95 351.3 221 75.6
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 5.6e-95 351.3 221 75.6
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 5.6e-95 351.3 223 74.4
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 5.6e-95 351.3 267 64.8
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 7.3e-95 350.9 243 69.1
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 1.2e-94 350.1 221 75.1
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.2e-94 350.1 221 75.1
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.2e-94 350.1 223 74.0
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 2.8e-94 349.0 224 73.7
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 2.8e-94 349.0 224 75.0
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 3.6e-94 348.6 221 74.7
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 6.2e-94 347.8 240 70.4
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 6.2e-94 347.8 223 73.5
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 8.1e-94 347.4 187 87.7
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.1e-93 347.1 214 75.7
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.1e-93 347.1 221 73.8
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.1e-93 347.1 224 74.1
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 1.1e-93 347.1 223 73.5
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.1e-93 347.1 223 73.1
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.8e-93 346.3 221 74.2
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 1.8e-93 346.3 225 74.2
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 6.8e-93 344.4 223 72.6
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 6.8e-93 344.4 222 73.0
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 6.8e-93 344.4 220 74.1
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 8.9e-93 344.0 223 71.7
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.2e-92 343.6 223 72.6
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.0e-92 342.8 220 73.6
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 4.4e-92 341.7 220 73.2
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.6e-92 340.9 222 72.1
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 7.6e-92 340.9 219 74.9
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 9.9e-92 340.5 226 68.6
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 2.2e-91 339.3 223 70.4
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 2.2e-91 339.3 223 70.9
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 2.9e-91 339.0 223 70.0
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 6.4e-91 337.8 254 63.8
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 1.1e-90 337.0 220 72.3
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 1.6e-89 333.2 226 67.3
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.7e-89 332.4 220 71.4
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 4.6e-89 331.6 222 69.4
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 1.3e-88 330.1 226 67.7
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 2.3e-88 329.3 223 71.7
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 3.9e-88 328.6 226 66.4
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 6.6e-88 327.8 224 70.1
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 1.1e-87 327.0 292 58.6
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 7.3e-87 324.3 224 66.5
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 9.6e-87 323.9 237 66.7
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 9.6e-87 323.9 196 78.1
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 6.8e-85 317.8 192 77.6
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.5e-84 316.6 191 77.0
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 7.6e-84 314.3 221 69.7
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 4.9e-83 311.6 221 68.3
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.0e-80 302.4 214 63.6
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 4.3e-79 298.5 151 96.0
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.1e-78 296.2 195 73.3
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 4.8e-78 295.0 221 59.7
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 1.1e-77 293.9 228 59.2
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 9.0e-77 290.8 212 65.6
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.6e-76 289.3 220 63.2
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.3e-75 287.0 225 60.9
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.3e-75 287.0 216 60.2
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.9e-74 283.1 219 60.3
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 7.1e-74 281.2 216 60.2
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 9.3e-74 280.8 194 70.1
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 2.7e-73 279.3 166 77.7
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 1.3e-70 270.4 215 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.6e-68 262.7 214 57.5
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 5.8e-68 261.5 221 55.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 6.4e-67 258.1 215 57.7
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 7.1e-66 254.6 245 52.7
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 9.3e-66 254.2 204 57.4
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.6e-65 251.9 224 60.3
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.6e-62 243.4 152 76.3
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.8e-62 242.7 216 53.2
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.4e-61 240.4 187 61.0
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 3.4e-60 235.7 151 68.9
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 1.5e-52 210.3 182 54.9
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 2.0e-52 209.9 218 47.7
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 2.3e-48 196.4 126 70.6
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 4.6e-41 172.2 99 83.8
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.8e-40 170.2 225 42.2
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 6.9e-37 158.3 164 45.7
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 1.2e-36 157.5 237 38.8
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.1e-32 142.1 119 56.3
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.2e-25 120.9 103 57.3
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 1.7e-22 110.5 68 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.0e-19 101.3 82 58.5
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 2.1e-17 93.6 58 75.9
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 3.6e-09 66.2 58 58.6
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 4.7e-09 65.9 113 37.2
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 2.3e-08 63.5 38 78.9


User provided reference genes

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