Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 3864.3 1961 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 1.6e-100 372.9 952 30.3
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 3.2e-98 365.2 930 30.9
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 4.8e-94 351.3 1107 27.6
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 1.1e-93 350.1 931 29.5
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 1.1e-93 350.1 696 33.2
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.8e-93 349.4 1164 27.3
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.6e-92 346.3 733 33.0
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 7.7e-92 344.0 578 36.9
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 1.9e-90 339.3 643 34.4
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 2.8e-89 335.5 1026 28.5
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 3.6e-89 335.1 1012 28.5
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 3.6e-89 335.1 841 30.6
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 4.7e-89 334.7 1085 28.1
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 6.1e-89 334.3 815 31.0
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 8.0e-89 334.0 811 31.6
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.8e-88 332.8 816 31.4
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.0e-88 332.0 828 30.9
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.0e-88 332.0 815 30.9
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 6.8e-88 330.9 807 31.0
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 8.9e-88 330.5 810 30.2
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 8.9e-88 330.5 811 30.6
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 1.5e-87 329.7 815 30.6
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 3.4e-87 328.6 813 30.5
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 3.4e-87 328.6 814 30.8
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 5.7e-87 327.8 813 30.4
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 5.7e-87 327.8 561 35.7
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.3e-86 326.6 804 31.3
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 1.3e-86 326.6 1015 27.4
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.7e-86 326.2 799 31.3
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.7e-86 326.2 799 31.3
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.7e-86 326.2 582 35.9
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 2.8e-86 325.5 813 30.3
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 2.8e-86 325.5 825 29.9
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 4.9e-86 324.7 812 31.2
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 6.3e-86 324.3 816 30.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 8.3e-86 323.9 801 30.3
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 8.3e-86 323.9 1090 27.2
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 8.3e-86 323.9 811 30.7
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 3.2e-85 322.0 827 30.0
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 3.2e-85 322.0 816 30.6
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.1e-85 321.6 818 30.3
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 4.1e-85 321.6 815 30.3
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 5.4e-85 321.2 809 30.2
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 9.2e-85 320.5 978 27.7
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 9.2e-85 320.5 821 30.0
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 9.2e-85 320.5 810 30.2
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 1.2e-84 320.1 809 29.8
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 2.0e-84 319.3 827 30.1
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 2.0e-84 319.3 809 29.9
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.0e-84 319.3 827 30.0
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.7e-84 318.9 673 33.7
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 2.7e-84 318.9 811 30.8
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 3.5e-84 318.5 803 30.4
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 5.9e-84 317.8 805 30.3
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 5.9e-84 317.8 805 30.3
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 1.3e-83 316.6 984 28.2
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 1.7e-83 316.2 904 29.3
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.3e-83 315.8 811 29.3
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 2.3e-83 315.8 918 29.8
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 2.9e-83 315.5 803 29.5
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 3.9e-83 315.1 815 29.8
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 5.0e-83 314.7 814 31.4
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 6.6e-83 314.3 994 27.9
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 6.6e-83 314.3 808 30.0
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 8.6e-83 313.9 811 29.2
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 8.6e-83 313.9 811 30.0
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 1.9e-82 312.8 1002 27.5
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 1.9e-82 312.8 1014 28.1
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 4.3e-82 311.6 1010 27.3
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 5.6e-82 311.2 1003 27.2
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 7.3e-82 310.8 816 29.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 1.2e-81 310.1 809 29.9
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 2.8e-81 308.9 983 27.5
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.7e-81 308.1 688 32.0
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 8.0e-81 307.4 629 34.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 1.4e-80 306.6 1002 27.7
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.8e-80 306.2 757 31.7
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 2.3e-80 305.8 1007 27.6
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 6.8e-80 304.3 812 29.4
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 9.8e-79 300.4 999 27.9
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 2.9e-78 298.9 990 27.3
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 2.9e-78 298.9 1013 26.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 8.3e-78 297.4 978 26.6
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 1.1e-77 297.0 925 28.3
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 1.1e-77 297.0 827 28.4
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 1.4e-77 296.6 590 33.2
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 1.9e-77 296.2 996 27.3
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 2.4e-77 295.8 1007 27.2
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 2.4e-77 295.8 677 32.5
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 1.6e-76 293.1 1017 27.0
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 2.0e-76 292.7 978 27.1
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 6.6e-75 287.7 645 31.9
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 1.1e-74 287.0 983 26.8
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 4.3e-74 285.0 1148 25.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 2.8e-73 282.3 808 29.1
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 1.5e-71 276.6 776 29.1
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 5.4e-69 268.1 809 27.8
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 2.3e-67 262.7 1213 25.2
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 1.4e-64 253.4 897 26.8
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.2e-57 230.3 441 35.8
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 7.6e-55 221.1 732 27.9
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 7.1e-53 214.5 573 30.9
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.2e-52 213.8 759 25.7
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 2.3e-51 209.5 458 31.9
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 2.5e-50 206.1 601 28.6
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 2.0e-47 196.4 409 31.8
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 5.8e-47 194.9 413 32.9
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 3.0e-43 182.6 609 28.1
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 1.9e-42 179.9 589 27.3
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.6e-39 167.9 436 29.8
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.7e-27 128.3 372 29.6
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 4.3e-26 125.6 465 26.9
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.8e-24 120.2 165 39.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.9e-22 112.8 551 26.0
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 5.5e-21 108.6 308 29.2
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 5.1e-19 102.1 185 35.1
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.8e-16 93.6 197 33.5
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 4.5e-15 89.0 208 31.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.2e-14 86.7 252 27.8
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 5.0e-14 85.5 476 24.8
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.5e-14 85.1 320 27.2
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 1.8e-11 77.0 103 37.9
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 3.4e-07 62.8 173 27.7
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 3.8e-06 59.3 72 30.6


User provided reference genes

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