Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022697 Carpinus fangiana HOM05D005522 ORTHO05D028644 0.0e+00 1253.4 612 100.0
Aqoxy1G00339 Aquilegia oxysepala HOM05D005522 ORTHO05D007414 1.2e-19 102.4 238 25.6
Cre13.g567100 Chlamydomonas reinhardtii HOM05D005522 ORTHO05D007414 2.7e-19 101.3 505 24.4
Mapoly0074s0031 Marchantia polymorpha HOM05D005522 ORTHO05D028644 2.3e-18 98.2 182 33.0
Pp3c20_3450 Physcomitrium patens HOM05D005522 ORTHO05D028644 2.3e-18 98.2 191 34.0
Mapoly0077s0021 Marchantia polymorpha HOM05D005522 ORTHO05D007414 3.0e-18 97.8 264 24.6
Prupe.7G046300 Prunus persica HOM05D005522 ORTHO05D007414 5.1e-18 97.1 238 26.5
AagrBONN_evm.TU.Sc2ySwM_362.2734 Anthoceros agrestis HOM05D005522 ORTHO05D007414 6.7e-18 96.7 236 26.7
FvH4_6g25110 Fragaria vesca HOM05D005522 ORTHO05D007414 8.8e-18 96.3 238 26.9
FAN14G2465 Fragaria x ananassa HOM05D005522 ORTHO05D007414 8.8e-18 96.3 238 26.9
FAN05G4952 Fragaria x ananassa HOM05D005522 ORTHO05D007414 1.5e-17 95.5 238 26.9
RcHm_v2.0_Chr2g0124941 Rosa chinensis HOM05D005522 ORTHO05D007414 1.5e-17 95.5 238 26.1
FAN02G3261 Fragaria x ananassa HOM05D005522 ORTHO05D007414 3.3e-17 94.4 242 26.4
PSO384G4421 Papaver somniferum HOM05D005522 ORTHO05D007414 3.3e-17 94.4 239 26.4
Migut.J01682 Erythranthe guttata HOM05D005522 ORTHO05D007414 7.4e-17 93.2 248 25.0
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 9.7e-17 92.8 237 24.1
MD00G1074000 Malus domestica HOM05D005522 ORTHO05D007414 9.7e-17 92.8 240 25.8
SGA_v2.0_scaffold69G23141 Striga asiatica HOM05D005522 ORTHO05D007414 9.7e-17 92.8 238 25.2
Zm00001eb093120 Zea mays HOM05D005522 ORTHO05D007414 1.3e-16 92.4 280 25.0
AUR62040849 Chenopodium quinoa HOM05D005522 ORTHO05D007414 1.7e-16 92.0 242 25.6
Medtr1g050360 Medicago truncatula HOM05D005522 ORTHO05D007414 1.7e-16 92.0 238 25.2
FAN09G3441 Fragaria x ananassa HOM05D005522 ORTHO05D007414 2.2e-16 91.7 238 26.5
Sopen10g030110 Solanum pennellii HOM05D005522 ORTHO05D007414 2.2e-16 91.7 239 25.9
Hma1.2p1_0056F.1_g031850 Hydrangea macrophylla HOM05D005522 ORTHO05D007414 8.2e-16 89.7 238 23.9
Lsat_1_v5_gn_5_159221 Lactuca sativa HOM05D005522 ORTHO05D007414 8.2e-16 89.7 236 25.0
Potri.016G040300 Populus trichocarpa HOM05D005522 ORTHO05D007414 8.2e-16 89.7 238 25.2
RhsimUnG0217500 Rhododendron simsii HOM05D005522 ORTHO05D007414 8.2e-16 89.7 242 24.8
Hund24634 Selenicereus undatus HOM05D005522 ORTHO05D007414 8.2e-16 89.7 242 24.4
Ah.04g151150 Amaranthus hybridus HOM05D005522 ORTHO05D007414 1.1e-15 89.4 242 25.6
Eucgr.A02267 Eucalyptus grandis HOM05D005522 ORTHO05D007414 1.1e-15 89.4 238 24.8
EL10Ac3g07189 Beta vulgaris HOM05D005522 ORTHO05D007414 1.8e-15 88.6 242 25.2
ECA248G3368 Erigeron canadensis HOM05D005522 ORTHO05D007414 1.8e-15 88.6 236 25.4
CSS0038435 Camellia sinensis var. sinensis HOM05D005522 ORTHO05D007414 2.4e-15 88.2 238 25.2
Haze_19737 Corylus avellana HOM05D005522 ORTHO05D007414 2.4e-15 88.2 238 24.4
Rhsim03G0034500 Rhododendron simsii HOM05D005522 ORTHO05D007414 2.4e-15 88.2 242 24.4
ATR0721G040 Amborella trichopoda HOM05D005522 ORTHO05D007414 3.1e-15 87.8 248 24.6
CiPaw.10G038000 Carya illinoinensis HOM05D005522 ORTHO05D007414 3.1e-15 87.8 242 24.0
Pp3c14_20870 Physcomitrium patens HOM05D005522 ORTHO05D007414 3.1e-15 87.8 229 29.3
Dinv04140 Davidia involucrata HOM05D005522 ORTHO05D007414 4.1e-15 87.4 238 24.4
Cfa016729 Carpinus fangiana HOM05D005522 ORTHO05D007414 5.3e-15 87.0 238 23.5
TWI77G0538 Tripterygium wilfordii HOM05D005522 ORTHO05D007414 9.1e-15 86.3 238 24.8
Lj2A394T33 Lonicera japonica HOM05D005522 ORTHO05D007414 1.5e-14 85.5 238 25.2
Sc19g0008330 Simmondsia chinensis HOM05D005522 ORTHO05D007414 1.5e-14 85.5 235 23.0
AT1G32300 Arabidopsis thaliana HOM05D001113 ORTHO05D000968 2.0e-14 85.1 536 23.5
BcaB05g22275 Brassica carinata HOM05D001113 ORTHO05D000968 2.6e-14 84.7 538 22.1
vmacro07825 Vaccinium macrocarpon HOM05D005522 ORTHO05D007414 4.5e-14 84.0 246 24.4
Pp3c14_20590 Physcomitrium patens HOM05D005522 ORTHO05D028644 5.9e-14 83.6 186 32.3
Carub.0004s2946 Capsella rubella HOM05D001113 ORTHO05D000968 7.7e-14 83.2 505 23.6
Sabra16G0043500 Salix brachista HOM05D005522 ORTHO05D007414 1.0e-13 82.8 174 29.3
Carub.0008s1697 Capsella rubella HOM05D001113 ORTHO05D000968 1.3e-13 82.4 536 22.4
AL1G46450 Arabidopsis lyrata HOM05D001113 ORTHO05D000968 2.2e-13 81.6 536 22.8
CDE04G1139 Ceratophyllum demersum HOM05D001113 ORTHO05D000968 2.2e-13 81.6 487 24.4
Prupe.7G046500 Prunus persica HOM05D005522 ORTHO05D007414 3.8e-13 80.9 232 25.4
HanXRQChr13g0391861 Helianthus annuus HOM05D005522 ORTHO05D007414 5.0e-13 80.5 230 23.0
CBR_g48422 Chara braunii HOM05D005522 ORTHO05D007414 8.5e-13 79.7 225 25.3
Cre14.g611650 Chlamydomonas reinhardtii HOM05D050739 ORTHO05D044327 8.5e-13 79.7 137 38.0
BcaC02g12644 Brassica carinata HOM05D001113 ORTHO05D000968 1.4e-12 79.0 530 22.3
BraA05t19105Z Brassica rapa HOM05D001113 ORTHO05D000968 1.4e-12 79.0 530 22.5
MD00G1048800 Malus domestica HOM05D005522 ORTHO05D007414 1.9e-12 78.6 241 24.9
CDE07G0210 Ceratophyllum demersum HOM05D001113 ORTHO05D000968 2.5e-12 78.2 500 23.8
TAR383G0673 Trochodendron aralioides HOM05D001113 ORTHO05D000968 2.5e-12 78.2 495 24.8
Pp3c2_4230 Physcomitrium patens HOM05D000128 ORTHO05D011646 7.2e-12 76.6 217 29.0
AagrBONN_evm.TU.Sc2ySwM_344.327 Anthoceros agrestis HOM05D001113 ORTHO05D000968 9.4e-12 76.3 510 23.1
Thhalv10002773m.g Eutrema salsugineum HOM05D001113 ORTHO05D000968 1.2e-11 75.9 532 22.4
BolC2t07636H Brassica oleracea HOM05D001113 ORTHO05D000968 2.7e-11 74.7 538 22.5
C02p15190 Brassica napus HOM05D001113 ORTHO05D000968 3.6e-11 74.3 534 22.1
A02p09050 Brassica napus HOM05D001113 ORTHO05D000968 1.0e-10 72.8 533 21.8
BraA02t05974Z Brassica rapa HOM05D001113 ORTHO05D000968 1.8e-10 72.0 500 22.2
SMO307G0092 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 1.8e-10 72.0 427 23.4
TWI34G0590 Tripterygium wilfordii HOM05D001113 ORTHO05D000968 3.0e-10 71.2 489 24.9
AagrBONN_evm.TU.Sc2ySwM_344.344 Anthoceros agrestis HOM05D001113 ORTHO05D000968 5.2e-10 70.5 229 32.8
AT5G56490 Arabidopsis thaliana HOM05D001113 ORTHO05D000968 1.5e-09 68.9 539 21.5
BcaNung03894 Brassica carinata HOM05D001113 ORTHO05D000968 2.0e-09 68.6 532 21.6
Carub.0001s3062 Capsella rubella HOM05D001113 ORTHO05D000968 2.0e-09 68.6 500 22.0
BcaC03g14219 Brassica carinata HOM05D001113 ORTHO05D000968 2.6e-09 68.2 479 22.3
Os08g0114300 Oryza sativa ssp. japonica HOM05D001113 ORTHO05D000968 3.3e-09 67.8 471 22.5
SEGI_20564 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 3.3e-09 67.8 502 22.1
CANSAT64G0017 Cannabis sativa HOM05D004834 ORTHO05D006247 4.4e-09 67.4 186 31.2
AUR62041722 Chenopodium quinoa HOM05D001113 ORTHO05D000968 5.7e-09 67.0 483 23.6
AUR62043519 Chenopodium quinoa HOM05D001113 ORTHO05D000968 5.7e-09 67.0 483 23.6
SEGI_38430 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 5.7e-09 67.0 217 28.1
AagrBONN_evm.TU.Sc2ySwM_344.5611 Anthoceros agrestis HOM05D001113 ORTHO05D000968 9.7e-09 66.2 484 24.6
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 9.7e-09 66.2 186 30.6
Pp3c21_20320 Physcomitrium patens HOM05D001113 ORTHO05D000968 9.7e-09 66.2 180 33.3
AagrBONN_evm.TU.Sc2ySwM_344.347 Anthoceros agrestis HOM05D001113 ORTHO05D000968 1.3e-08 65.9 188 28.7
HPP92_007324 Vanilla planifolia HOM05D001113 ORTHO05D000968 1.3e-08 65.9 286 26.2
MSTRG.19322 Avicennia marina HOM05D004834 ORTHO05D006247 1.7e-08 65.5 186 30.6
AUR62030366 Chenopodium quinoa HOM05D005522 ORTHO05D007414 1.7e-08 65.5 164 26.2
Cc08_g09200 Coffea canephora HOM05D001113 ORTHO05D000968 1.7e-08 65.5 519 22.4
CARHR201680 Cardamine hirsuta HOM05D001113 ORTHO05D000968 4.8e-08 63.9 501 21.2
Glyma.03G205500 Glycine max HOM05D004834 ORTHO05D006247 4.8e-08 63.9 186 31.2
SEGI_34991 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 4.8e-08 63.9 540 21.7
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 6.3e-08 63.5 186 31.2
CARHR142070 Cardamine hirsuta HOM05D001113 ORTHO05D000968 6.3e-08 63.5 531 21.1
RhsimUnG0236100 Rhododendron simsii HOM05D001113 ORTHO05D000968 6.3e-08 63.5 225 29.3
RcHm_v2.0_Chr3g0477531 Rosa chinensis HOM05D004834 ORTHO05D006247 6.3e-08 63.5 186 31.2
Lj1g0003379 Lotus japonicus HOM05D004834 ORTHO05D006247 8.2e-08 63.2 186 30.6
MD12G1046600 Malus domestica HOM05D004834 ORTHO05D006247 1.1e-07 62.8 190 29.5
AUR62022667 Chenopodium quinoa HOM05D001113 ORTHO05D000968 1.4e-07 62.4 295 24.4
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 1.4e-07 62.4 186 30.6
Os08g0460600 Oryza sativa ssp. japonica HOM05D000597 ORTHO05D006307 1.4e-07 62.4 184 28.3
PSO210G3927 Papaver somniferum HOM05D001113 ORTHO05D000968 1.4e-07 62.4 256 26.2
Prupe.7G088800 Prunus persica HOM05D004834 ORTHO05D006247 1.4e-07 62.4 186 29.6
ATR0697G015 Amborella trichopoda HOM05D004834 ORTHO05D006247 1.8e-07 62.0 186 30.6
arahy.Tifrunner.gnm1.ann1.HS4ETS Arachis hypogaea HOM05D000597 ORTHO05D006307 1.8e-07 62.0 183 28.4
AUR62009308 Chenopodium quinoa HOM05D001113 ORTHO05D000968 1.8e-07 62.0 436 23.2
MCO07G223 Micromonas commoda HOM05D050739 ORTHO05D044327 1.8e-07 62.0 103 35.9
Oeu047077.1 Olea europaea HOM05D000597 ORTHO05D006307 1.8e-07 62.0 221 25.3
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 1.8e-07 62.0 186 31.2
SEGI_36513 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.8e-07 62.0 226 26.1
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 2.4e-07 61.6 186 30.6
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.1e-07 61.2 186 31.2
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.1e-07 61.2 186 31.2
Rhsim01G0179300 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.1e-07 61.2 261 26.4
SMO147G0159 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 3.1e-07 61.2 238 23.9
SEGI_01780 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 3.1e-07 61.2 225 26.2
SEGI_34740 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 3.1e-07 61.2 208 27.9
FAN02G4310 Fragaria x ananassa HOM05D004834 ORTHO05D006247 4.1e-07 60.8 186 30.6
arahy.Tifrunner.gnm1.ann1.76U9D5 Arachis hypogaea HOM05D000597 ORTHO05D006307 5.3e-07 60.5 183 27.9
SMO118G0244 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 5.3e-07 60.5 423 22.0
SMO144G0211 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 5.3e-07 60.5 423 22.0
FvH4_6g21120 Fragaria vesca HOM05D004834 ORTHO05D006247 7.0e-07 60.1 186 30.6
FAN14G4987 Fragaria x ananassa HOM05D004834 ORTHO05D006247 7.0e-07 60.1 186 30.6
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 7.0e-07 60.1 172 30.2
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 7.0e-07 60.1 186 30.6
A10p13830 Brassica napus HOM05D001113 ORTHO05D000968 9.1e-07 59.7 284 24.3
BraA10t43476Z Brassica rapa HOM05D001113 ORTHO05D000968 9.1e-07 59.7 284 24.3
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.1e-07 59.7 104 33.7
Eucgr.A02536 Eucalyptus grandis HOM05D004834 ORTHO05D006247 9.1e-07 59.7 186 29.6
Gohir.A12G116100 Gossypium hirsutum HOM05D001113 ORTHO05D000968 9.1e-07 59.7 250 26.4
MD12G1046700 Malus domestica HOM05D004834 ORTHO05D006247 9.1e-07 59.7 186 29.6
SEGI_00590 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 9.1e-07 59.7 173 28.9
Sopen11g020840 Solanum pennellii HOM05D004834 ORTHO05D006247 9.1e-07 59.7 186 30.1
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 1.2e-06 59.3 172 29.7
Gorai.008G130100 Gossypium raimondii HOM05D001113 ORTHO05D000968 1.2e-06 59.3 250 26.4
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 1.2e-06 59.3 172 30.2
SEGI_21721 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.2e-06 59.3 169 27.8
Thecc.05G183400 Theobroma cacao HOM05D004834 ORTHO05D006247 1.2e-06 59.3 186 29.6
SEGI_02531 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.6e-06 58.9 214 25.7
SEGI_07508 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.6e-06 58.9 214 25.7
SEGI_11924 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.6e-06 58.9 214 25.7
SEGI_39399 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.6e-06 58.9 214 25.7
VMungo1309G2276 Vigna mungo HOM05D001113 ORTHO05D000968 2.6e-06 58.2 211 27.5
Gohir.D12G119600 Gossypium hirsutum HOM05D001113 ORTHO05D000968 3.5e-06 57.8 249 25.3
Sc09g0009150 Simmondsia chinensis HOM05D001113 ORTHO05D000968 3.5e-06 57.8 177 30.5
COL.COLO4_29472 Corchorus olitorius HOM05D004834 ORTHO05D006247 4.5e-06 57.4 186 29.0
Phvul.009G257400 Phaseolus vulgaris HOM05D001113 ORTHO05D000968 4.5e-06 57.4 210 26.7
SMO266G0034 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 4.5e-06 57.4 190 30.0
THA.LOC104817396 Tarenaya hassleriana HOM05D001113 ORTHO05D000968 4.5e-06 57.4 294 24.1
MCO05G403 Micromonas commoda HOM05D005272 ORTHO05D006890 5.9e-06 57.0 184 28.8
Aqoxy7G03865 Aquilegia oxysepala HOM05D001113 ORTHO05D000968 7.7e-06 56.6 189 27.0
AL8G32230 Arabidopsis lyrata HOM05D001113 ORTHO05D000968 7.7e-06 56.6 295 23.4


User provided reference genes

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