Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1919.4 986 100.0
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.1e-110 405.6 1027 29.2
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 6.6e-108 396.4 1012 29.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 4.3e-107 393.7 1004 28.5
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 4.3e-107 393.7 1005 29.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 4.3e-107 393.7 1069 28.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 4.3e-107 393.7 1007 29.1
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 1.2e-106 392.1 1009 29.1
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 1.2e-106 392.1 1038 29.6
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 2.1e-106 391.3 1029 29.0
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 2.1e-106 391.3 967 29.1
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 2.1e-106 391.3 1044 28.8
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 2.8e-106 391.0 1002 29.2
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 3.6e-106 390.6 1036 28.5
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 8.1e-106 389.4 1000 29.4
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 8.1e-106 389.4 1005 29.3
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 1.1e-105 389.0 1022 28.8
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.8e-105 388.3 1033 28.9
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 1.8e-105 388.3 1033 28.7
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 3.1e-105 387.5 1029 27.8
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 3.1e-105 387.5 1035 29.5
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 4.0e-105 387.1 1032 28.0
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 4.0e-105 387.1 1010 28.3
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 5.2e-105 386.7 1001 29.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 6.8e-105 386.3 1038 28.4
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 8.9e-105 386.0 1008 28.7
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 1.2e-104 385.6 1002 28.5
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 1.5e-104 385.2 1005 28.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 1.5e-104 385.2 1009 29.0
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 2.6e-104 384.4 1039 28.7
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 2.6e-104 384.4 1010 28.4
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 2.6e-104 384.4 1018 28.9
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 3.4e-104 384.0 1013 28.9
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 4.4e-104 383.6 1036 29.1
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 4.4e-104 383.6 1014 28.8
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 4.4e-104 383.6 1010 29.0
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 5.8e-104 383.3 1027 28.3
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 7.6e-104 382.9 1016 28.3
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 7.6e-104 382.9 1005 28.8
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 9.9e-104 382.5 1005 29.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 9.9e-104 382.5 1001 28.6
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 1.3e-103 382.1 1037 28.7
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 1.3e-103 382.1 999 29.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 1.3e-103 382.1 1035 28.9
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 2.9e-103 380.9 1040 28.8
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 2.9e-103 380.9 1022 29.1
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 2.9e-103 380.9 1001 28.3
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 2.9e-103 380.9 1005 29.1
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 2.9e-103 380.9 1006 28.9
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 4.9e-103 380.2 1002 28.8
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 6.4e-103 379.8 1023 29.1
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 6.4e-103 379.8 1027 28.1
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 8.4e-103 379.4 1023 28.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 1.1e-102 379.0 1042 28.4
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 1.1e-102 379.0 1039 28.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 1.1e-102 379.0 1043 28.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 1.4e-102 378.6 1034 28.0
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 1.4e-102 378.6 1016 29.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.4e-102 378.6 1007 28.5
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 2.4e-102 377.9 1024 29.0
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 4.1e-102 377.1 1016 28.3
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 4.1e-102 377.1 991 28.6
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 9.2e-102 375.9 1013 28.7
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 1.2e-101 375.6 1010 28.0
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 2.1e-101 374.8 1011 28.1
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 2.7e-101 374.4 1053 28.2
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 2.7e-101 374.4 1013 28.7
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 3.5e-101 374.0 1036 28.0
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 6.0e-101 373.2 1028 28.3
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.0e-100 372.5 1036 27.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 1.0e-100 372.5 1028 27.9
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-100 372.1 1018 27.8
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.7e-100 371.7 1040 27.8
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.1e-99 369.0 1028 28.5
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 1.5e-99 368.6 1073 27.6
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.9e-99 368.2 1022 28.6
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.3e-99 367.5 1038 27.6
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 4.3e-99 367.1 1006 28.7
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 4.3e-99 367.1 1037 28.0
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.3e-99 366.3 1041 27.4
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.2e-98 365.5 1046 27.5
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 1.2e-98 365.5 968 29.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 1.6e-98 365.2 991 28.6
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 2.1e-98 364.8 1064 27.3
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 6.2e-98 363.2 1033 27.5
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 1.4e-97 362.1 1058 27.6
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 2.4e-97 361.3 1046 28.1
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 3.1e-97 360.9 1010 29.0
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 5.2e-97 360.1 1024 27.1
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 9.0e-97 359.4 924 29.4
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.3e-95 355.5 1036 26.6
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 1.2e-93 349.0 909 29.5
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.6e-93 348.6 1032 26.6
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 3.9e-92 344.0 851 30.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 2.8e-90 337.8 892 29.1
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 2.4e-89 334.7 936 28.0
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 9.9e-88 329.3 767 30.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 2.2e-87 328.2 1128 25.1
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 2.9e-87 327.8 772 29.5
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 1.9e-86 325.1 780 29.6
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 9.3e-86 322.8 764 29.1
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 2.1e-85 321.6 772 29.3
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 4.6e-85 320.5 988 25.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.3e-84 318.9 1073 25.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 1.1e-83 315.8 849 29.2
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 1.1e-83 315.8 774 28.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.5e-83 315.5 1038 25.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 4.3e-83 313.9 769 29.3
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 5.5e-78 297.0 689 30.5
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 8.7e-76 289.7 747 27.6
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.5e-75 288.1 848 27.2
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.5e-71 273.5 1013 25.2
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 3.5e-69 267.7 1067 25.4
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 6.0e-69 266.9 601 30.4
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.0e-60 239.6 527 30.4
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-56 225.3 609 29.2
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 4.4e-51 207.6 610 27.9
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.1e-46 193.0 648 26.4
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.7e-45 187.6 578 27.9
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 6.7e-44 183.7 852 23.7
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 3.1e-41 174.9 518 26.8
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.6e-35 155.2 328 30.2
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.5e-35 153.7 333 31.2
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.2e-29 136.3 296 31.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.3e-28 132.1 411 26.8
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 7.0e-25 120.6 270 32.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 9.5e-22 110.2 269 28.6
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.8e-17 95.9 358 26.5
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 3.8e-15 88.2 174 33.9
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 6.6e-15 87.4 252 30.2
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.3e-14 84.0 174 32.2
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 4.7e-13 81.3 198 28.8
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 1.0e-12 80.1 200 30.5
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.4e-12 79.7 138 32.6
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 2.6e-11 75.5 169 30.2
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.8e-11 74.3 189 23.8
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 2.4e-09 68.9 113 34.5
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.8e-08 63.9 205 22.9


User provided reference genes

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