Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 3054.2 1554 100.0
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 2.8e-44 185.7 1187 21.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 3.6e-44 185.3 1208 21.9
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 1.4e-43 183.3 1193 21.5
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 3.1e-43 182.2 1188 21.5
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 3.1e-43 182.2 1193 21.3
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 3.1e-43 182.2 1186 21.7
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 4.0e-43 181.8 1192 21.4
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 2.6e-42 179.1 1192 21.3
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 7.6e-42 177.6 1191 20.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 9.9e-42 177.2 1191 21.9
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 1.7e-41 176.4 1210 21.6
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 3.8e-41 175.3 1196 22.1
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 3.8e-41 175.3 1192 20.6
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.9e-40 172.9 1185 23.0
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 5.4e-40 171.4 1156 21.4
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 9.3e-40 170.6 1197 22.3
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 2.7e-39 169.1 1198 22.1
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 3.9e-38 165.2 1194 21.4
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 1.1e-37 163.7 1199 21.9
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 1.9e-37 162.9 1213 20.6
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 2.5e-37 162.5 1193 21.0
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 3.3e-37 162.2 1223 20.8
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 1.3e-36 160.2 1175 21.7
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.6e-36 159.8 1206 21.8
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 2.8e-36 159.1 1106 21.5
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 2.8e-36 159.1 1106 21.5
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 2.8e-36 159.1 1195 22.5
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 2.8e-36 159.1 1207 21.6
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 3.7e-36 158.7 1197 21.1
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 4.8e-36 158.3 1189 20.4
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 2.4e-35 156.0 1156 21.7
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 2.4e-35 156.0 1209 21.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 1.5e-34 153.3 1211 20.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 1.5e-34 153.3 1150 20.9
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 2.0e-34 152.9 1239 22.2
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 2.0e-34 152.9 1191 20.5
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 2.6e-34 152.5 1223 21.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 2.6e-34 152.5 1211 20.9
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 3.4e-34 152.1 1209 21.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 4.5e-34 151.8 1196 20.7
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 4.5e-34 151.8 1192 20.4
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 5.8e-34 151.4 1201 22.1
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 5.8e-34 151.4 1204 21.9
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 5.8e-34 151.4 1125 20.8
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 1.0e-33 150.6 1223 21.3
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 1.3e-33 150.2 1194 20.4
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 1.7e-33 149.8 1211 20.4
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.9e-33 149.1 870 22.8
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 3.8e-33 148.7 910 22.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 3.8e-33 148.7 910 22.2
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 8.4e-33 147.5 1165 19.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 8.4e-33 147.5 978 21.0
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 1.1e-32 147.1 1210 21.7
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 1.1e-32 147.1 1251 19.7
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 1.4e-32 146.7 1229 21.6
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 1.4e-32 146.7 1182 20.2
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 3.2e-32 145.6 1221 21.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 4.2e-32 145.2 1214 21.2
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 9.3e-32 144.1 909 21.5
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 9.3e-32 144.1 1205 19.9
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 4.6e-31 141.7 1243 20.0
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 6.0e-31 141.4 1198 19.5
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 1.0e-30 140.6 965 20.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 1.3e-30 140.2 1252 19.6
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 1.8e-30 139.8 1230 21.3
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 2.3e-30 139.4 1195 20.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 3.0e-30 139.0 1164 19.8
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 3.0e-30 139.0 976 21.8
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 3.0e-30 139.0 1188 21.0
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 3.0e-30 139.0 884 24.1
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 3.0e-30 139.0 918 20.8
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 3.0e-30 139.0 1063 21.2
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 3.9e-30 138.7 1258 19.8
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 3.9e-30 138.7 951 20.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 5.1e-30 138.3 1166 19.3
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 5.1e-30 138.3 1186 21.6
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 8.7e-30 137.5 1204 21.2
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 8.7e-30 137.5 1248 20.3
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.1e-29 137.1 1202 21.2
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 1.1e-29 137.1 1213 20.9
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.5e-29 136.7 1210 20.9
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 7.4e-29 134.4 1198 21.0
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.3e-28 133.7 1209 20.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 2.1e-28 132.9 1210 20.2
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 2.8e-28 132.5 1199 20.5
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 6.2e-28 131.3 1178 19.5
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 6.2e-28 131.3 718 22.0
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.1e-27 129.0 923 21.2
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 5.3e-27 128.3 1180 20.6
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.5e-26 126.7 714 22.1
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 3.4e-26 125.6 707 22.1
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 5.8e-26 124.8 1309 19.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 7.6e-26 124.4 1310 21.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.0e-25 124.0 357 26.1
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 1.3e-25 123.6 874 20.4
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.7e-25 123.2 379 23.2
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 1.7e-25 123.2 771 20.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 2.9e-25 122.5 976 20.8
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 8.4e-25 120.9 425 23.3
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.2e-24 119.0 682 23.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 7.1e-24 117.9 846 20.3
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 9.3e-24 117.5 847 20.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.5e-23 115.5 590 21.4
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.5e-23 115.5 1013 20.6
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.6e-23 115.2 515 22.5
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 6.1e-23 114.8 1183 19.9
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.3e-22 113.6 870 20.6
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 3.0e-22 112.5 891 21.1
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 3.0e-22 112.5 815 21.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.5e-21 110.2 902 21.1
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 9.0e-19 100.9 298 22.1
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 4.2e-16 92.0 188 27.7
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.8e-11 76.6 264 22.3
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.4e-10 72.4 245 25.3
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.7e-09 70.1 674 19.3
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 2.3e-06 59.7 107 28.0


User provided reference genes

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