Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022519 Carpinus fangiana HOM05D003244 ORTHO05D121923 0.0e+00 1872.8 1056 100.0
Zm00001eb202950 Zea mays HOM05D003244 ORTHO05D003645 8.9e-21 107.1 251 32.7
Os02g0480900 Oryza sativa ssp. japonica HOM05D003244 ORTHO05D003645 3.2e-18 98.6 232 31.9
CAN.G862.25 Capsicum annuum HOM05D003244 ORTHO05D003645 4.6e-17 94.7 234 32.5
FAN09G4047 Fragaria x ananassa HOM05D003244 ORTHO05D003645 4.6e-17 94.7 254 31.5
Phvul.005G156000 Phaseolus vulgaris HOM05D003244 ORTHO05D003645 6.0e-17 94.4 237 31.2
FvH4_6g34380 Fragaria vesca HOM05D003244 ORTHO05D003645 1.0e-16 93.6 254 31.5
FAN14G0986 Fragaria x ananassa HOM05D003244 ORTHO05D003645 1.0e-16 93.6 254 31.5
Gohir.A06G192700 Gossypium hirsutum HOM05D003244 ORTHO05D003645 1.0e-16 93.6 235 31.1
Medtr2g099480 Medicago truncatula HOM05D003244 ORTHO05D003645 1.0e-16 93.6 235 29.8
MSTRG.9512 Avicennia marina HOM05D003244 ORTHO05D003645 1.3e-16 93.2 234 30.8
Lalb_Chr24g0396621 Lupinus albus HOM05D003244 ORTHO05D003645 1.3e-16 93.2 235 31.1
Psat5g290880 Pisum sativum HOM05D003244 ORTHO05D003645 1.3e-16 93.2 235 30.6
RcHm_v2.0_Chr2g0144721 Rosa chinensis HOM05D003244 ORTHO05D003645 1.3e-16 93.2 253 30.8
FAN02G3680 Fragaria x ananassa HOM05D003244 ORTHO05D003645 1.7e-16 92.8 254 31.1
Hma1.2p1_0496F.1_g166130 Hydrangea macrophylla HOM05D003244 ORTHO05D003645 1.7e-16 92.8 236 31.4
CsaV3_3G043570 Cucumis sativus L. HOM05D003244 ORTHO05D003645 3.0e-16 92.0 243 31.3
FAN05G2950 Fragaria x ananassa HOM05D003244 ORTHO05D003645 3.0e-16 92.0 254 31.1
Nn8g38728 Nelumbo nucifera HOM05D003244 ORTHO05D003645 3.0e-16 92.0 238 31.9
Solyc03g121950.3 Solanum lycopersicum HOM05D003244 ORTHO05D003645 3.0e-16 92.0 234 31.2
Sopen03g040770 Solanum pennellii HOM05D003244 ORTHO05D003645 3.0e-16 92.0 234 31.2
Zm00001eb241130 Zea mays HOM05D003244 ORTHO05D003645 3.0e-16 92.0 323 29.1
MELO3C025813.2 Cucumis melo HOM05D003244 ORTHO05D003645 3.9e-16 91.7 243 31.3
Gohir.D06G200600 Gossypium hirsutum HOM05D003244 ORTHO05D003645 3.9e-16 91.7 241 29.9
Gorai.010G234100 Gossypium raimondii HOM05D003244 ORTHO05D003645 3.9e-16 91.7 241 29.9
Actinidia32174 Actinidia chinensis HOM05D003244 ORTHO05D003645 5.1e-16 91.3 263 29.3
ATR0724G004 Amborella trichopoda HOM05D003244 ORTHO05D003645 5.1e-16 91.3 242 33.1
Gohir.D04G009200 Gossypium hirsutum HOM05D003244 ORTHO05D003645 5.1e-16 91.3 393 27.5
Gorai.012G011100 Gossypium raimondii HOM05D003244 ORTHO05D003645 5.1e-16 91.3 393 27.5
Ca_01233_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 6.6e-16 90.9 234 31.2
Gohir.A05G406400 Gossypium hirsutum HOM05D003244 ORTHO05D003645 6.6e-16 90.9 390 26.4
COL.COLO4_30782 Corchorus olitorius HOM05D003244 ORTHO05D003645 8.6e-16 90.5 235 30.6
Lalb_Chr22g0352001 Lupinus albus HOM05D003244 ORTHO05D003645 8.6e-16 90.5 235 30.6
Thecc.06G117700 Theobroma cacao HOM05D003244 ORTHO05D003645 8.6e-16 90.5 233 30.9
TAR383G0203 Trochodendron aralioides HOM05D003244 ORTHO05D003645 8.6e-16 90.5 303 29.7
Duzib192G0343 Durio zibethinus HOM05D003244 ORTHO05D003645 1.1e-15 90.1 244 29.9
Glyma.13G346900 Glycine max HOM05D003244 ORTHO05D003645 1.1e-15 90.1 237 31.6
TPR.G6601 Trifolium pratense HOM05D003244 ORTHO05D003645 1.1e-15 90.1 235 30.2
Lj3g0017349 Lotus japonicus HOM05D003244 ORTHO05D003645 1.5e-15 89.7 243 29.2
Peaxi162Scf00038g01820 Petunia axillaris HOM05D003244 ORTHO05D003645 1.5e-15 89.7 232 32.3
arahy.Tifrunner.gnm1.ann1.62L32R Arachis hypogaea HOM05D003244 ORTHO05D003645 2.5e-15 89.0 235 30.2
arahy.Tifrunner.gnm1.ann1.S9YVIH Arachis hypogaea HOM05D003244 ORTHO05D003645 2.5e-15 89.0 235 30.2
MSTRG.4785 Avicennia marina HOM05D003244 ORTHO05D003645 3.3e-15 88.6 237 31.2
ClCG07G013970 Citrullus lanatus HOM05D003244 ORTHO05D003645 3.3e-15 88.6 243 30.9
Lj5C39G2 Lonicera japonica HOM05D003244 ORTHO05D003645 3.3e-15 88.6 235 30.6
DCAR_016132 Daucus carota HOM05D003244 ORTHO05D003645 5.6e-15 87.8 239 30.1
Cfa003546 Carpinus fangiana HOM05D003244 ORTHO05D003645 7.3e-15 87.4 244 27.9
SGA_v2.0_scaffold4G02059 Striga asiatica HOM05D003244 ORTHO05D003645 7.3e-15 87.4 234 31.2
AL3G26210 Arabidopsis lyrata HOM05D003244 ORTHO05D003645 9.5e-15 87.0 234 30.8
Glyma.16G005700 Glycine max HOM05D003244 ORTHO05D003645 9.5e-15 87.0 235 31.5
Ah.01g020820 Amaranthus hybridus HOM05D003244 ORTHO05D003645 1.2e-14 86.7 241 29.0
Lj3g0018176 Lotus japonicus HOM05D003244 ORTHO05D003645 1.2e-14 86.7 270 28.1
Prupe.7G067500 Prunus persica HOM05D003244 ORTHO05D003645 1.2e-14 86.7 235 30.6
Haze_16008 Corylus avellana HOM05D003244 ORTHO05D003645 1.6e-14 86.3 244 28.7
Glyma.15G027500 Glycine max HOM05D003244 ORTHO05D003645 1.6e-14 86.3 237 30.0
SalBow6G2321 Salvia bowleyana HOM05D003244 ORTHO05D003645 2.1e-14 85.9 255 31.0
THA.LOC104815625 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 2.1e-14 85.9 255 29.4
vmacro17050 Vaccinium macrocarpon HOM05D003244 ORTHO05D003645 2.1e-14 85.9 241 28.6
Aqoxy7G01099 Aquilegia oxysepala HOM05D003244 ORTHO05D003645 2.8e-14 85.5 237 29.1
Oeu058715.1 Olea europaea HOM05D003244 ORTHO05D003645 2.8e-14 85.5 239 30.1
Migut.D00945 Erythranthe guttata HOM05D003244 ORTHO05D003645 3.6e-14 85.1 237 30.8
Solyc06g062860.4 Solanum lycopersicum HOM05D003244 ORTHO05D003645 3.6e-14 85.1 242 30.6
Hma1.2p1_0291F.1_g115240 Hydrangea macrophylla HOM05D003244 ORTHO05D003645 4.7e-14 84.7 268 29.1
Sed0005467 Sechium edule HOM05D003244 ORTHO05D003645 4.7e-14 84.7 242 28.9
HPP92_023800 Vanilla planifolia HOM05D003244 ORTHO05D003645 4.7e-14 84.7 228 30.3
GSVIVG01016786001 Vitis vinifera HOM05D003244 ORTHO05D003645 4.7e-14 84.7 235 30.6
AT3G14010 Arabidopsis thaliana HOM05D003244 ORTHO05D003645 8.1e-14 84.0 234 30.3
CANSAT56G4312 Cannabis sativa HOM05D003244 ORTHO05D003645 8.1e-14 84.0 244 30.3
Dinv37877 Davidia involucrata HOM05D003244 ORTHO05D003645 8.1e-14 84.0 268 28.7
Gohir.A10G052600 Gossypium hirsutum HOM05D003244 ORTHO05D003645 8.1e-14 84.0 233 28.8
Pp3c1_22620 Physcomitrium patens HOM05D003244 ORTHO05D003645 8.1e-14 84.0 238 30.7
Actinidia21786 Actinidia chinensis HOM05D003244 ORTHO05D003645 1.1e-13 83.6 267 28.1
HanXRQChr10g0312291 Helianthus annuus HOM05D003244 ORTHO05D003645 1.1e-13 83.6 299 28.4
Sopen06g022320 Solanum pennellii HOM05D003244 ORTHO05D003645 1.1e-13 83.6 236 30.9
SalBow7G3930 Salvia bowleyana HOM05D003244 ORTHO05D003645 1.4e-13 83.2 234 30.3
unitig_8.g3564 Utricularia gibba HOM05D003244 ORTHO05D003645 1.4e-13 83.2 234 32.5
TWI79G0895 Tripterygium wilfordii HOM05D003244 ORTHO05D003645 1.8e-13 82.8 245 31.0
Ciclev10025086m.g Citrus clementina HOM05D003244 ORTHO05D003645 2.3e-13 82.4 243 28.0
Lalb_Chr14g0372621 Lupinus albus HOM05D003244 ORTHO05D003645 2.3e-13 82.4 237 28.7
TAR626G1385 Trochodendron aralioides HOM05D003244 ORTHO05D003645 2.3e-13 82.4 296 28.4
Atru.chr1.3900 Acer truncatum HOM05D003244 ORTHO05D003645 3.1e-13 82.0 266 29.3
SMO112G0047 Selaginella moellendorffii HOM05D003244 ORTHO05D003645 3.1e-13 82.0 513 25.1
Manes.11G022200 Manihot esculenta HOM05D003244 ORTHO05D003645 4.0e-13 81.6 268 28.7
SGA_v2.0_scaffold68G22885 Striga asiatica HOM05D003244 ORTHO05D003645 4.0e-13 81.6 234 30.3
Cpa.g.sc25.97 Carica papaya HOM05D003244 ORTHO05D003645 5.2e-13 81.3 235 29.4
CDE07G0771 Ceratophyllum demersum HOM05D003244 ORTHO05D003645 5.2e-13 81.3 242 29.8
Nitab4.5_0002795g0110 Nicotiana tabacum HOM05D003244 ORTHO05D003645 5.2e-13 81.3 244 30.7
VMungo0331G0221 Vigna mungo HOM05D001762 ORTHO05D001774 5.2e-13 81.3 237 29.1
Carub.0003s1359 Capsella rubella HOM05D003244 ORTHO05D003645 8.9e-13 80.5 253 29.2
MBI13_g11371_MAGBIO Magnolia biondii HOM05D003244 ORTHO05D003645 8.9e-13 80.5 301 29.2
Sed0027854 Sechium edule HOM05D003244 ORTHO05D003645 8.9e-13 80.5 238 29.0
ECA234G2908 Erigeron canadensis HOM05D003244 ORTHO05D003645 1.2e-12 80.1 237 30.0
MD17G1171000 Malus domestica HOM05D003244 ORTHO05D003645 1.2e-12 80.1 242 28.5
VMungo1080G0053 Vigna mungo HOM05D003244 ORTHO05D003645 1.2e-12 80.1 329 26.1
Glyma.07G036300 Glycine max HOM05D003244 ORTHO05D003645 1.5e-12 79.7 253 29.2
Lsat_1_v5_gn_5_135681 Lactuca sativa HOM05D003244 ORTHO05D003645 1.5e-12 79.7 235 29.4
Lj9A522G71 Lonicera japonica HOM05D003244 ORTHO05D003645 1.5e-12 79.7 220 30.9
PSO210G5765 Papaver somniferum HOM05D003244 ORTHO05D003645 1.5e-12 79.7 238 28.6
Phvul.010G133101 Phaseolus vulgaris HOM05D003244 ORTHO05D003645 2.0e-12 79.3 236 30.1
Sp3g12260 Schrenkiella parvula HOM05D003244 ORTHO05D003645 2.0e-12 79.3 242 27.7
CiPaw.02G137000 Carya illinoinensis HOM05D003244 ORTHO05D003645 2.6e-12 79.0 235 28.1
PSO421G0240 Papaver somniferum HOM05D003244 ORTHO05D003645 2.6e-12 79.0 237 29.5
SEGI_12050 Sequoiadendron giganteum HOM05D003244 ORTHO05D003645 2.6e-12 79.0 246 31.3
CSS0016093 Camellia sinensis var. sinensis HOM05D003244 ORTHO05D003645 4.4e-12 78.2 297 26.9
HanXRQChr12g0360461 Helianthus annuus HOM05D003244 ORTHO05D003645 4.4e-12 78.2 235 29.4
PSO063G5495 Papaver somniferum HOM05D003244 ORTHO05D003645 4.4e-12 78.2 237 29.5
Rhsim12G0208900 Rhododendron simsii HOM05D003244 ORTHO05D003645 4.4e-12 78.2 296 26.7
BcaC08g44167 Brassica carinata HOM05D003244 ORTHO05D003645 5.8e-12 77.8 264 27.7
Aa31LG8G1220 Aethionema arabicum HOM05D003244 ORTHO05D003645 7.6e-12 77.4 265 31.3
vmacro22213 Vaccinium macrocarpon HOM05D003244 ORTHO05D003645 7.6e-12 77.4 270 27.0
AUR62016380 Chenopodium quinoa HOM05D003244 ORTHO05D003645 1.3e-11 76.6 241 28.2
Manes.04G142700 Manihot esculenta HOM05D003244 ORTHO05D003645 1.3e-11 76.6 260 27.7
PGR102G1386 Punica granatum HOM05D003244 ORTHO05D003645 1.3e-11 76.6 325 28.3
AUR62011561 Chenopodium quinoa HOM05D003244 ORTHO05D003645 1.7e-11 76.3 262 27.9
Dinv04023 Davidia involucrata HOM05D003244 ORTHO05D003645 1.7e-11 76.3 239 28.9
THA.LOC104810365 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 1.7e-11 76.3 253 27.7
Lsat_1_v5_gn_4_93821 Lactuca sativa HOM05D003244 ORTHO05D003645 2.2e-11 75.9 235 29.4
EL10Ac9g21941 Beta vulgaris HOM05D003244 ORTHO05D003645 2.9e-11 75.5 239 28.9
Cre01.g063997 Chlamydomonas reinhardtii HOM05D003244 ORTHO05D003645 2.9e-11 75.5 256 29.7
HanXRQChr09g0276711 Helianthus annuus HOM05D003244 ORTHO05D003645 2.9e-11 75.5 245 28.6
Psat4g183560 Pisum sativum HOM05D003244 ORTHO05D003645 2.9e-11 75.5 263 29.3
Potri.001G171100 Populus trichocarpa HOM05D003244 ORTHO05D003645 2.9e-11 75.5 231 29.0
Actinidia39089 Actinidia chinensis HOM05D003244 ORTHO05D003645 4.9e-11 74.7 363 27.8
arahy.Tifrunner.gnm1.ann1.THNB81 Arachis hypogaea HOM05D003244 ORTHO05D003645 4.9e-11 74.7 256 27.0
Carub.0001s4341 Capsella rubella HOM05D003244 ORTHO05D003645 4.9e-11 74.7 231 29.0
A06p00490 Brassica napus HOM05D003244 ORTHO05D003645 6.4e-11 74.3 236 29.7
Pp3c2_16780 Physcomitrium patens HOM05D003244 ORTHO05D003645 6.4e-11 74.3 261 29.1
Nn6g35582 Nelumbo nucifera HOM05D003244 ORTHO05D003645 1.1e-10 73.6 294 28.6
Potri.003G063000 Populus trichocarpa HOM05D003244 ORTHO05D003645 1.1e-10 73.6 240 27.5
TPR.G16437 Trifolium pratense HOM05D003244 ORTHO05D003645 1.1e-10 73.6 327 26.6
CARHR044520 Cardamine hirsuta HOM05D003244 ORTHO05D003645 1.9e-10 72.8 257 29.2
A05p17720 Brassica napus HOM05D003244 ORTHO05D003645 2.4e-10 72.4 231 28.1
BraA05t20663Z Brassica rapa HOM05D003244 ORTHO05D003645 2.4e-10 72.4 231 28.1
DCAR_007631 Daucus carota HOM05D003244 ORTHO05D003645 2.4e-10 72.4 277 28.2
SMO364G0079 Selaginella moellendorffii HOM05D003244 ORTHO05D003645 2.4e-10 72.4 363 28.1
CBR_g52348 Chara braunii HOM05D003244 ORTHO05D003645 3.2e-10 72.0 246 28.0
Nitab4.5_0011707g0020 Nicotiana tabacum HOM05D003244 ORTHO05D003645 5.4e-10 71.2 147 36.1
A01p39610 Brassica napus HOM05D003244 ORTHO05D003645 7.1e-10 70.9 235 28.1
BraA01t04001Z Brassica rapa HOM05D003244 ORTHO05D003645 7.1e-10 70.9 235 28.1
Sp1g40620 Schrenkiella parvula HOM05D003244 ORTHO05D003645 7.1e-10 70.9 282 27.3
BcaC01g03960 Brassica carinata HOM05D003244 ORTHO05D003645 9.2e-10 70.5 269 27.9
C03p46710 Brassica napus HOM05D003244 ORTHO05D003645 9.2e-10 70.5 269 27.9
BolC3t16936H Brassica oleracea HOM05D003244 ORTHO05D003645 9.2e-10 70.5 269 27.9
TWI31G0664 Tripterygium wilfordii HOM05D003244 ORTHO05D003645 9.2e-10 70.5 255 27.8
Hund06581 Selenicereus undatus HOM05D003244 ORTHO05D003645 1.2e-09 70.1 213 29.1
BcaNung06450 Brassica carinata HOM05D003244 ORTHO05D003645 1.6e-09 69.7 235 27.7
Sc10g0005710 Simmondsia chinensis HOM05D003244 ORTHO05D003645 2.7e-09 68.9 335 26.3
BcaNung04893 Brassica carinata HOM05D003244 ORTHO05D003645 3.5e-09 68.6 251 27.5
CiPaw.01G221000 Carya illinoinensis HOM05D003244 ORTHO05D003645 3.5e-09 68.6 385 25.7
Peaxi162Scf00207g01431 Petunia axillaris HOM05D003244 ORTHO05D003645 3.5e-09 68.6 159 34.6
Duzib235G0409 Durio zibethinus HOM05D003244 ORTHO05D003645 4.6e-09 68.2 191 29.3
Eucgr.F03170 Eucalyptus grandis HOM05D003244 ORTHO05D003645 6.0e-09 67.8 390 25.9
AL1G62890 Arabidopsis lyrata HOM05D003244 ORTHO05D003645 7.8e-09 67.4 236 28.0
BcaB02g10857 Brassica carinata HOM05D003244 ORTHO05D003645 1.3e-08 66.6 111 39.6
BcaB04g18816 Brassica carinata HOM05D003244 ORTHO05D003645 1.3e-08 66.6 239 28.0
AagrBONN_evm.TU.Sc2ySwM_117.2057 Anthoceros agrestis HOM05D003244 ORTHO05D003645 1.7e-08 66.2 430 22.1
AT1G54170 Arabidopsis thaliana HOM05D003244 ORTHO05D003645 2.3e-08 65.9 229 28.4
MD09G1186100 Malus domestica HOM05D003244 ORTHO05D003645 2.3e-08 65.9 341 25.5
A03p38600 Brassica napus HOM05D003244 ORTHO05D003645 3.0e-08 65.5 269 27.5
CARHR088820 Cardamine hirsuta HOM05D003244 ORTHO05D003645 3.9e-08 65.1 364 25.0
BcaC08g43597 Brassica carinata HOM05D003244 ORTHO05D003645 5.1e-08 64.7 230 28.7
C01p50550 Brassica napus HOM05D003244 ORTHO05D003645 5.1e-08 64.7 282 27.0
C06p09950 Brassica napus HOM05D003244 ORTHO05D003645 5.1e-08 64.7 230 28.7
BolC1t05006H Brassica oleracea HOM05D003244 ORTHO05D003645 5.1e-08 64.7 282 27.0
Thhalv10011331m.g Eutrema salsugineum HOM05D003244 ORTHO05D003645 5.1e-08 64.7 231 26.8
CAN.G825.19 Capsicum annuum HOM05D000544 ORTHO05D003645 6.6e-08 64.3 159 33.3
BraA03t13007Z Brassica rapa HOM05D003244 ORTHO05D003645 8.6e-08 63.9 269 27.1
PRCOL_00001567 Prasinoderma coloniale HOM05D003244 ORTHO05D003645 1.1e-07 63.5 372 26.6
Thhalv10020519m.g Eutrema salsugineum HOM05D003244 ORTHO05D003645 1.5e-07 63.2 406 25.1
arahy.Tifrunner.gnm1.ann1.7TGU71 Arachis hypogaea HOM05D003244 ORTHO05D003645 5.6e-07 61.2 334 24.0
Actinidia28160 Actinidia chinensis HOM05D003244 ORTHO05D003645 7.3e-07 60.8 110 37.3
Medtr8g019560 Medicago truncatula HOM05D003244 ORTHO05D003645 7.3e-07 60.8 359 25.1
Ca_05015_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 1.2e-06 60.1 197 28.4
Nitab4.5_0002072g0120 Nicotiana tabacum HOM05D003244 ORTHO05D003645 1.2e-06 60.1 276 26.1
Rhsim08G0237100 Rhododendron simsii HOM05D003244 ORTHO05D003645 1.2e-06 60.1 375 23.7


User provided reference genes

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