Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.5e-270 934.9 469 100.0
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.4e-148 529.6 466 57.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 4.2e-137 492.3 466 54.3
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 4.0e-95 352.8 456 41.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 7.8e-91 338.6 453 40.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.0e-90 338.2 453 40.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.3e-90 337.0 459 39.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 3.3e-89 333.2 460 38.9
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 9.5e-89 331.6 448 40.4
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 9.5e-89 331.6 460 38.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.6e-88 330.9 457 38.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.6e-88 330.9 461 39.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.8e-88 330.1 461 39.5
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.6e-88 329.7 464 40.1
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 3.6e-88 329.7 460 38.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.2e-88 328.9 459 40.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 6.2e-88 328.9 458 38.9
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.0e-88 328.6 460 39.3
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 8.0e-88 328.6 459 40.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.1e-87 328.2 453 40.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.1e-87 328.2 460 38.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.1e-87 328.2 453 39.3
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.4e-87 327.8 455 39.1
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.4e-87 327.8 459 40.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.3e-87 327.0 462 39.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-87 326.6 464 39.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-87 326.6 455 39.1
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.1e-87 326.6 465 39.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.1e-87 326.6 453 39.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 4.0e-87 326.2 457 40.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 4.0e-87 326.2 456 39.0
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.0e-87 326.2 459 40.5
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.0e-87 326.2 461 39.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.2e-87 325.9 465 39.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.8e-87 325.5 459 39.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.8e-87 325.5 452 39.8
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.8e-87 325.5 462 40.5
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 8.9e-87 325.1 455 39.1
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 8.9e-87 325.1 460 38.9
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 8.9e-87 325.1 462 39.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 8.9e-87 325.1 460 38.9
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.2e-86 324.7 462 39.2
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.2e-86 324.7 454 39.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.2e-86 324.7 465 38.3
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.2e-86 324.7 468 38.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.5e-86 324.3 455 38.9
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-86 324.3 461 39.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.5e-86 324.3 459 39.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.5e-86 324.3 448 39.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 2.0e-86 323.9 454 39.4
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.0e-86 323.9 455 38.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.0e-86 323.9 457 39.8
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.0e-86 323.9 452 38.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.0e-86 323.9 453 40.6
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.6e-86 323.6 462 39.0
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 3.4e-86 323.2 461 39.5
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 3.4e-86 323.2 461 39.3
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.4e-86 323.2 461 38.8
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 3.4e-86 323.2 463 39.1
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.4e-86 323.2 462 39.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 3.4e-86 323.2 453 39.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 4.4e-86 322.8 461 38.8
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 4.4e-86 322.8 452 38.3
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 4.4e-86 322.8 462 38.5
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.4e-86 322.8 461 38.8
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.5e-86 322.0 461 39.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 7.5e-86 322.0 452 38.1
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 9.8e-86 321.6 464 37.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.3e-85 321.2 456 39.3
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.7e-85 320.9 456 37.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.2e-85 320.5 461 39.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.2e-85 320.5 452 38.5
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.2e-85 320.5 473 38.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.9e-85 320.1 455 39.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.9e-85 320.1 461 39.0
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.9e-85 320.1 454 39.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.7e-85 319.7 453 38.4
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 3.7e-85 319.7 457 38.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 3.7e-85 319.7 462 39.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 6.4e-85 318.9 454 39.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 8.3e-85 318.5 464 38.6
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.3e-85 318.5 454 39.4
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 8.3e-85 318.5 449 39.6
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 8.3e-85 318.5 482 39.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.3e-85 318.5 454 39.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-84 318.2 493 37.1
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-84 317.4 494 37.2
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.4e-84 317.0 452 38.1
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.1e-84 316.2 456 38.8
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 5.4e-84 315.8 468 37.6
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 7.1e-84 315.5 453 39.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 7.1e-84 315.5 452 38.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 9.2e-84 315.1 459 37.9
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 9.2e-84 315.1 452 38.9
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.2e-83 314.7 448 38.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 2.1e-83 313.9 460 37.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.7e-83 313.5 460 38.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.7e-83 313.5 463 38.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.5e-83 313.2 459 38.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.5e-83 313.2 448 38.8
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.8e-83 312.0 479 37.8
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.0e-82 310.1 444 38.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.1e-82 309.3 474 36.3
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.1e-81 308.1 475 37.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.3e-81 306.6 482 36.9
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 5.6e-81 305.8 451 39.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.1e-79 301.6 422 40.5
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.0e-79 299.7 492 35.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.3e-77 294.7 422 39.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.3e-77 294.7 502 34.7
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 9.2e-76 288.5 387 41.3
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.6e-75 287.7 502 35.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.1e-75 287.3 388 41.8
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.7e-75 287.0 388 41.8
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 6.0e-75 285.8 406 39.4
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.8e-75 285.4 466 36.1
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.3e-73 280.0 452 35.6
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 7.3e-73 278.9 452 36.7
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 9.6e-73 278.5 387 39.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.6e-73 278.5 372 41.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 6.2e-72 275.8 369 40.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 3.1e-71 273.5 453 36.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 7.6e-70 268.9 454 36.1
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-69 267.3 427 36.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.9e-69 266.2 445 35.7
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 4.6e-67 259.6 380 38.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-65 255.0 438 36.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.8e-64 250.4 445 34.6
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 4.8e-64 249.6 465 34.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.8e-63 247.7 325 41.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.8e-56 223.0 419 33.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-51 208.4 406 35.2
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.0e-42 178.7 226 38.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-41 175.3 321 34.3
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.5e-38 164.9 259 39.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.8e-37 160.2 336 31.2
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.0e-34 150.6 305 30.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.3e-33 147.1 244 36.9
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 3.4e-30 137.1 189 43.4
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-23 115.2 224 33.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.1e-23 113.6 290 27.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 4.1e-23 113.6 135 41.5
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.1e-23 113.6 117 44.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.4e-20 105.1 98 48.0
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-19 101.7 188 31.4
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 2.0e-17 94.7 131 39.7
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.3e-16 92.0 166 34.3
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 8.5e-13 79.3 121 33.9
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 6.1e-11 73.2 234 25.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 8.0e-11 72.8 89 43.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 3.3e-09 67.4 90 45.6
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.7e-09 66.6 388 22.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.3e-08 63.2 111 32.4
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.4e-07 62.0 80 38.8
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.6e-06 58.5 88 39.8


User provided reference genes

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