Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 8.4e-85 317.0 162 100.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 9.5e-12 74.3 100 38.0
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 9.5e-12 74.3 100 38.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.6e-11 73.6 100 40.0
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.1e-11 73.2 93 36.6
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 6.1e-11 71.6 93 36.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 6.1e-11 71.6 105 37.1
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 6.1e-11 71.6 93 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 8.0e-11 71.2 95 38.9
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.0e-10 70.9 94 38.3
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 1.0e-10 70.9 103 34.0
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.4e-10 70.5 107 36.4
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.8e-10 70.1 95 38.9
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.8e-10 70.1 93 37.6
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.8e-10 70.1 93 34.4
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.3e-10 69.7 95 35.8
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 2.3e-10 69.7 95 36.8
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.0e-10 69.3 104 34.6
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 3.0e-10 69.3 104 34.6
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 3.0e-10 69.3 95 34.7
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 3.0e-10 69.3 95 34.7
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.0e-10 69.3 93 35.5
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.0e-10 68.9 93 35.5
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.0e-10 68.9 93 37.6
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 4.0e-10 68.9 93 34.4
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.0e-10 68.9 93 37.6
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 4.0e-10 68.9 93 36.6
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 5.2e-10 68.6 95 33.7
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 5.2e-10 68.6 93 36.6
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 5.2e-10 68.6 93 35.5
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 5.2e-10 68.6 93 35.5
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 5.2e-10 68.6 105 35.2
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 5.2e-10 68.6 93 35.5
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 5.2e-10 68.6 93 35.5
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 6.8e-10 68.2 95 33.7
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 6.8e-10 68.2 95 33.7
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 6.8e-10 68.2 95 33.7
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 6.8e-10 68.2 98 36.7
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 6.8e-10 68.2 93 36.6
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 8.8e-10 67.8 104 33.7
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 8.8e-10 67.8 97 35.1
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 8.8e-10 67.8 93 35.5
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 8.8e-10 67.8 93 34.4
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 8.8e-10 67.8 93 34.4
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.2e-09 67.4 93 35.5
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.2e-09 67.4 90 37.8
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.2e-09 67.4 94 35.1
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.2e-09 67.4 93 35.5
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 1.2e-09 67.4 93 35.5
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.5e-09 67.0 93 32.3
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.5e-09 67.0 105 34.3
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 2.0e-09 66.6 93 35.5
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 2.0e-09 66.6 95 35.8
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.0e-09 66.6 103 34.0
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.6e-09 66.2 93 35.5
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.6e-09 66.2 93 36.6
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.6e-09 66.2 93 35.5
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.6e-09 66.2 93 33.3
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.6e-09 66.2 93 35.5
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 3.4e-09 65.9 93 36.6
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 3.4e-09 65.9 89 36.0
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.4e-09 65.9 93 33.3
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.4e-09 65.9 93 36.6
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 4.4e-09 65.5 93 35.5
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.4e-09 65.5 93 34.4
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 5.7e-09 65.1 93 32.3
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 5.7e-09 65.1 95 32.6
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.7e-09 65.1 93 35.5
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.7e-09 65.1 93 35.5
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 5.7e-09 65.1 93 35.5
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 5.7e-09 65.1 93 34.4
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 5.7e-09 65.1 93 32.3
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 7.5e-09 64.7 105 31.4
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 7.5e-09 64.7 93 34.4
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.5e-09 64.7 89 34.8
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 7.5e-09 64.7 92 34.8
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 7.5e-09 64.7 93 36.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 9.8e-09 64.3 102 32.4
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 9.8e-09 64.3 105 34.3
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 9.8e-09 64.3 93 34.4
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 9.8e-09 64.3 93 37.6
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 9.8e-09 64.3 93 33.3
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.3e-08 63.9 93 35.5
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.3e-08 63.9 93 32.3
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.3e-08 63.9 92 34.8
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.3e-08 63.9 93 34.4
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.3e-08 63.9 93 34.4
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.3e-08 63.9 93 34.4
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.3e-08 63.9 93 34.4
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.7e-08 63.5 93 33.3
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.7e-08 63.5 93 32.3
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.7e-08 63.5 93 32.3
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.7e-08 63.5 93 32.3
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 2.2e-08 63.2 93 34.4
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.2e-08 63.2 93 34.4
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 2.2e-08 63.2 104 32.7
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.8e-08 62.8 95 33.7
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.8e-08 62.8 93 33.3
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 3.7e-08 62.4 105 30.5
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 4.9e-08 62.0 93 34.4
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 4.9e-08 62.0 92 32.6
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.3e-08 61.6 93 34.4
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.3e-08 61.6 93 34.4
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 6.3e-08 61.6 93 34.4
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.3e-08 61.6 92 34.8
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 8.3e-08 61.2 93 33.3
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 8.3e-08 61.2 93 32.3
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.8e-07 60.1 93 34.4
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.8e-07 60.1 93 33.3
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.8e-07 60.1 101 33.7
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.4e-07 59.7 93 33.3
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.1e-07 59.3 93 31.2
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 4.1e-07 58.9 93 32.3
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 7.0e-07 58.2 93 32.3
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-06 57.4 93 29.0
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.6e-06 57.0 80 37.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.6e-06 57.0 95 34.7
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 1.6e-06 57.0 78 38.5
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.0e-06 56.6 93 35.5
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 2.7e-06 56.2 90 28.9
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 2.7e-06 56.2 108 33.3
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 4.5e-06 55.5 93 34.4
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 5.9e-06 55.1 73 35.6
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 5.9e-06 55.1 94 31.9
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 7.7e-06 54.7 93 31.2


User provided reference genes

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