Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022188 Carpinus fangiana HOM05D002798 ORTHO05D003052 0.0e+00 1236.1 645 100.0
CBR_g49719 Chara braunii HOM05D002798 ORTHO05D003052 3.4e-12 77.8 138 35.5
Oeu012139.1 Olea europaea HOM05D002798 ORTHO05D003052 2.2e-11 75.1 133 30.8
TAR365G0619 Trochodendron aralioides HOM05D002798 ORTHO05D003052 2.9e-11 74.7 130 33.1
Solyc01g100130.3 Solanum lycopersicum HOM05D002798 ORTHO05D003052 4.9e-11 73.9 135 31.9
Sopen01g043640 Solanum pennellii HOM05D002798 ORTHO05D003052 4.9e-11 73.9 135 31.9
PGSC0003DMG400024731 Solanum tuberosum HOM05D002798 ORTHO05D003052 6.4e-11 73.6 135 31.9
Duzib177G0806 Durio zibethinus HOM05D002798 ORTHO05D003052 8.4e-11 73.2 126 33.3
Oeu020897.2 Olea europaea HOM05D002798 ORTHO05D003052 8.4e-11 73.2 138 31.2
Peaxi162Scf00073g00011 Petunia axillaris HOM05D002798 ORTHO05D003052 8.4e-11 73.2 135 31.9
arahy.Tifrunner.gnm1.ann1.PTHF6B Arachis hypogaea HOM05D002798 ORTHO05D003052 1.1e-10 72.8 133 31.6
arahy.Tifrunner.gnm1.ann1.X25DG1 Arachis hypogaea HOM05D002798 ORTHO05D003052 1.1e-10 72.8 133 31.6
Nn4g25695 Nelumbo nucifera HOM05D002798 ORTHO05D003052 1.1e-10 72.8 136 32.4
Duzib106G1156 Durio zibethinus HOM05D002798 ORTHO05D003052 1.4e-10 72.4 126 32.5
HPP92_018239 Vanilla planifolia HOM05D002798 ORTHO05D003052 1.4e-10 72.4 125 32.0
Gorai.013G206200 Gossypium raimondii HOM05D002798 ORTHO05D003052 1.9e-10 72.0 126 32.5
MBI18_g05915_MAGBIO Magnolia biondii HOM05D002798 ORTHO05D003052 1.9e-10 72.0 126 32.5
MBI19_g38161_MAGBIO Magnolia biondii HOM05D002798 ORTHO05D003052 2.4e-10 71.6 126 34.1
Nitab4.5_0002715g0130 Nicotiana tabacum HOM05D002798 ORTHO05D003052 2.4e-10 71.6 133 31.6
SGA_v2.0_scaffold4G01966 Striga asiatica HOM05D002798 ORTHO05D003052 2.4e-10 71.6 137 28.5
HPP92_006898 Vanilla planifolia HOM05D002798 ORTHO05D003052 2.4e-10 71.6 136 31.6
Nitab4.5_0001971g0010 Nicotiana tabacum HOM05D002798 ORTHO05D003052 3.2e-10 71.2 136 30.1
Gohir.D13G180700 Gossypium hirsutum HOM05D002798 ORTHO05D003052 4.2e-10 70.9 126 32.5
Rhsim12G0147500 Rhododendron simsii HOM05D002798 ORTHO05D003052 4.2e-10 70.9 295 25.4
Duzib128G0304 Durio zibethinus HOM05D002798 ORTHO05D003052 5.4e-10 70.5 126 31.7
Gohir.A13G174880 Gossypium hirsutum HOM05D002798 ORTHO05D003052 5.4e-10 70.5 126 32.5
PSO170G2184 Papaver somniferum HOM05D002798 ORTHO05D003052 7.1e-10 70.1 136 32.4
PSO357G0121 Papaver somniferum HOM05D002798 ORTHO05D003052 7.1e-10 70.1 136 32.4
CAN.G1273.19 Capsicum annuum HOM05D002798 ORTHO05D003052 9.3e-10 69.7 133 31.6
Migut.B00983 Erythranthe guttata HOM05D002798 ORTHO05D003052 9.3e-10 69.7 134 29.1
Os03g0302200 Oryza sativa ssp. japonica HOM05D002798 ORTHO05D003052 9.3e-10 69.7 137 28.5
PGR031G0203 Punica granatum HOM05D002798 ORTHO05D003052 9.3e-10 69.7 126 32.5
SMO347G0659 Selaginella moellendorffii HOM05D002798 ORTHO05D003052 9.3e-10 69.7 196 26.5
CANSAT54G2942 Cannabis sativa HOM05D002798 ORTHO05D003080 1.2e-09 69.3 130 31.5
ECA236G2114 Erigeron canadensis HOM05D002798 ORTHO05D003052 1.2e-09 69.3 126 32.5
Lj5A342T76 Lonicera japonica HOM05D002798 ORTHO05D003052 1.2e-09 69.3 126 31.7
Mapoly0001s0127 Marchantia polymorpha HOM05D002798 ORTHO05D003052 1.2e-09 69.3 125 32.8
TWI56G0232 Tripterygium wilfordii HOM05D002798 ORTHO05D003052 1.2e-09 69.3 125 31.2
unitig_46.g18369 Utricularia gibba HOM05D002798 ORTHO05D003052 1.2e-09 69.3 137 29.2
Ciclev10000286m.g Citrus clementina HOM05D002798 ORTHO05D003052 1.6e-09 68.9 126 31.7
COL.COLO4_34182 Corchorus olitorius HOM05D002798 ORTHO05D003052 1.6e-09 68.9 125 31.2
Gohir.A11G271100 Gossypium hirsutum HOM05D002798 ORTHO05D003052 1.6e-09 68.9 126 31.7
Gohir.D11G281300 Gossypium hirsutum HOM05D002798 ORTHO05D003052 1.6e-09 68.9 126 31.7
Gorai.007G303700 Gossypium raimondii HOM05D002798 ORTHO05D003052 1.6e-09 68.9 126 31.7
HanXRQChr01g0011791 Helianthus annuus HOM05D002798 ORTHO05D003052 1.6e-09 68.9 146 31.5
Manes.08G113500 Manihot esculenta HOM05D002798 ORTHO05D003052 1.6e-09 68.9 131 31.3
CiPaw.15G114900 Carya illinoinensis HOM05D002798 ORTHO05D003052 2.1e-09 68.6 125 31.2
Gohir.D13G113700 Gossypium hirsutum HOM05D002798 ORTHO05D003052 2.1e-09 68.6 133 30.1
Gorai.013G127600 Gossypium raimondii HOM05D002798 ORTHO05D003052 2.1e-09 68.6 133 30.1
Manes.08G113700 Manihot esculenta HOM05D002798 ORTHO05D003052 2.1e-09 68.6 131 31.3
THA.LOC104819392 Tarenaya hassleriana HOM05D002798 ORTHO05D003052 2.1e-09 68.6 125 32.0
TAR633G0751 Trochodendron aralioides HOM05D002798 ORTHO05D003052 2.1e-09 68.6 137 30.7
Lj9A204T41 Lonicera japonica HOM05D002798 ORTHO05D003052 2.7e-09 68.2 137 29.2
Sc16g0008850 Simmondsia chinensis HOM05D002798 ORTHO05D003052 2.7e-09 68.2 174 28.7
Thecc.05G319200 Theobroma cacao HOM05D002798 ORTHO05D003052 2.7e-09 68.2 126 31.0
CSS0041567 Camellia sinensis var. sinensis HOM05D002798 ORTHO05D003052 3.5e-09 67.8 133 31.6
CDE02G0549 Ceratophyllum demersum HOM05D002798 ORTHO05D003052 3.5e-09 67.8 128 31.2
Gohir.A13G111200 Gossypium hirsutum HOM05D002798 ORTHO05D003052 3.5e-09 67.8 134 30.6
Potri.005G021000 Populus trichocarpa HOM05D002798 ORTHO05D003052 3.5e-09 67.8 126 30.2
Sed0009501 Sechium edule HOM05D002798 ORTHO05D003052 3.5e-09 67.8 131 30.5
Hund07125 Selenicereus undatus HOM05D002798 ORTHO05D003052 3.5e-09 67.8 135 28.9
TPR.G1632 Trifolium pratense HOM05D002798 ORTHO05D003052 3.5e-09 67.8 134 29.9
ATR0706G010 Amborella trichopoda HOM05D002798 ORTHO05D003052 4.6e-09 67.4 125 31.2
Sabra05G0027000 Salix brachista HOM05D002798 ORTHO05D003052 4.6e-09 67.4 126 30.2
Cc02_g34580 Coffea canephora HOM05D002798 ORTHO05D003052 6.0e-09 67.0 144 29.2
HanXRQChr15g0466321 Helianthus annuus HOM05D002798 ORTHO05D003052 6.0e-09 67.0 135 31.9
Hund21731 Selenicereus undatus HOM05D002798 ORTHO05D003052 6.0e-09 67.0 135 28.1
BcaC05g29788 Brassica carinata HOM05D002798 ORTHO05D003052 7.8e-09 66.6 126 31.0
CDE08G0882 Ceratophyllum demersum HOM05D000608 ORTHO05D003052 7.8e-09 66.6 127 30.7
Sabra13G0010000 Salix brachista HOM05D002798 ORTHO05D003052 7.8e-09 66.6 126 29.4
Sc09g0002790 Simmondsia chinensis HOM05D002798 ORTHO05D003052 7.8e-09 66.6 136 28.7
TWI12G0598 Tripterygium wilfordii HOM05D002798 ORTHO05D003052 7.8e-09 66.6 125 30.4
CsaV3_1G038480 Cucumis sativus L. HOM05D002798 ORTHO05D003052 1.0e-08 66.2 126 30.2
Aa31LG5G16080 Aethionema arabicum HOM05D002798 ORTHO05D003052 1.3e-08 65.9 149 27.5
Thhalv10020032m.g Eutrema salsugineum HOM05D002798 ORTHO05D003052 1.3e-08 65.9 167 28.1
Manes.06G080200 Manihot esculenta HOM05D002798 ORTHO05D003052 1.3e-08 65.9 166 30.1
Pp3c2_37790 Physcomitrium patens HOM05D002798 ORTHO05D003052 1.3e-08 65.9 225 27.1
Potri.013G011400 Populus trichocarpa HOM05D002798 ORTHO05D003052 1.3e-08 65.9 131 28.2
AT3G05670 Arabidopsis thaliana HOM05D002798 ORTHO05D003052 1.7e-08 65.5 126 31.0
C03p41660 Brassica napus HOM05D002798 ORTHO05D003052 1.7e-08 65.5 167 28.1
AUR62005253 Chenopodium quinoa HOM05D002798 ORTHO05D003052 1.7e-08 65.5 134 27.6
ClCG03G017550 Citrullus lanatus HOM05D002798 ORTHO05D003052 1.7e-08 65.5 126 30.2
Dinv24414 Davidia involucrata HOM05D002798 ORTHO05D003052 1.7e-08 65.5 133 30.1
Lalb_Chr06g0167561 Lupinus albus HOM05D002798 ORTHO05D003052 1.7e-08 65.5 144 28.5
Sed0013561 Sechium edule HOM05D002798 ORTHO05D003052 1.7e-08 65.5 126 30.2
HPP92_001068 Vanilla planifolia HOM05D002798 ORTHO05D003052 1.7e-08 65.5 133 29.3
Actinidia35537 Actinidia chinensis HOM05D002798 ORTHO05D003052 2.3e-08 65.1 127 32.3
AUR62000702 Chenopodium quinoa HOM05D002798 ORTHO05D003052 2.3e-08 65.1 134 26.9
Ca_21750_v3 Cicer arietinum L. HOM05D002798 ORTHO05D003052 2.3e-08 65.1 144 30.6
Dinv30857 Davidia involucrata HOM05D002798 ORTHO05D003052 2.3e-08 65.1 126 31.0
Lj1g0017235 Lotus japonicus HOM05D002798 ORTHO05D003052 2.3e-08 65.1 156 28.8
Lj5g0008592 Lotus japonicus HOM05D002798 ORTHO05D003052 2.3e-08 65.1 126 31.0
Phvul.007G199500 Phaseolus vulgaris HOM05D002798 ORTHO05D003052 2.3e-08 65.1 126 30.2
Zm00001eb396440 Zea mays HOM05D002798 ORTHO05D003052 2.3e-08 65.1 141 29.1
MELO3C015274.2 Cucumis melo HOM05D002798 ORTHO05D003052 3.0e-08 64.7 126 30.2
Glyma.10G149400 Glycine max HOM05D002798 ORTHO05D003052 3.0e-08 64.7 126 30.2
Medtr7g112410 Medicago truncatula HOM05D002798 ORTHO05D003052 3.0e-08 64.7 134 29.1
EL10Ac5g11197 Beta vulgaris HOM05D002798 ORTHO05D003052 3.9e-08 64.3 125 32.0
BcaB04g19250 Brassica carinata HOM05D002798 ORTHO05D003052 3.9e-08 64.3 126 29.4
CARHR080110 Cardamine hirsuta HOM05D002798 ORTHO05D003052 5.1e-08 63.9 167 28.1
Cfa006676 Carpinus fangiana HOM05D002798 ORTHO05D003052 5.1e-08 63.9 150 28.0
Psat3g013760 Pisum sativum HOM05D002798 ORTHO05D003052 5.1e-08 63.9 160 28.8
Atru.chr9.609 Acer truncatum HOM05D002798 ORTHO05D003052 6.6e-08 63.5 125 30.4
Actinidia16840 Actinidia chinensis HOM05D002798 ORTHO05D003052 6.6e-08 63.5 156 28.8
arahy.Tifrunner.gnm1.ann1.XBA6K2 Arachis hypogaea HOM05D002798 ORTHO05D003052 6.6e-08 63.5 125 29.6
BcaC05g30098 Brassica carinata HOM05D002798 ORTHO05D003052 6.6e-08 63.5 167 28.7
BcaC05g30102 Brassica carinata HOM05D002798 ORTHO05D003052 6.6e-08 63.5 167 28.7
C05p61520 Brassica napus HOM05D002869 ORTHO05D003080 6.6e-08 63.5 126 29.4
BolC5t34812H Brassica oleracea HOM05D002798 ORTHO05D003052 6.6e-08 63.5 167 28.7
BraA05t22950Z Brassica rapa HOM05D002798 ORTHO05D003052 6.6e-08 63.5 126 29.4
Haze_04095 Corylus avellana HOM05D002798 ORTHO05D003052 6.6e-08 63.5 150 28.0
Glyma.20G238800 Glycine max HOM05D002798 ORTHO05D003052 6.6e-08 63.5 126 30.2
Lalb_Chr18g0045961 Lupinus albus HOM05D002798 ORTHO05D003052 6.6e-08 63.5 129 31.0
Ah.06g189100 Amaranthus hybridus HOM05D002798 ORTHO05D003052 8.7e-08 63.2 135 26.7
A03p34250 Brassica napus HOM05D002798 ORTHO05D003052 8.7e-08 63.2 167 27.5
Prupe.6G316500 Prunus persica HOM05D002798 ORTHO05D003052 8.7e-08 63.2 126 29.4
VMungo0720G0572 Vigna mungo HOM05D002798 ORTHO05D003052 8.7e-08 63.2 126 30.2
AL3G16320 Arabidopsis lyrata HOM05D002798 ORTHO05D003052 1.1e-07 62.8 167 28.1
arahy.Tifrunner.gnm1.ann1.Y3MCKA Arachis hypogaea HOM05D002798 ORTHO05D003052 1.1e-07 62.8 125 29.6
BraA03t12599Z Brassica rapa HOM05D002798 ORTHO05D003052 1.1e-07 62.8 167 27.5
SHI09239 Sapria himalayana HOM05D004258 ORTHO05D005163 1.1e-07 62.8 49 51.0
BolC3t16446H Brassica oleracea HOM05D002798 ORTHO05D003052 1.5e-07 62.4 167 28.7
Carub.0003s0499 Capsella rubella HOM05D002798 ORTHO05D003052 1.5e-07 62.4 167 28.1
CiPaw.07G026000 Carya illinoinensis HOM05D002798 ORTHO05D003052 1.5e-07 62.4 150 27.3
CiPaw.08G158100 Carya illinoinensis HOM05D002798 ORTHO05D003052 1.5e-07 62.4 151 27.2
FvH4_6g07080 Fragaria vesca HOM05D002798 ORTHO05D003052 1.5e-07 62.4 125 29.6
FAN05G2011 Fragaria x ananassa HOM05D002798 ORTHO05D003052 1.5e-07 62.4 125 29.6
Lalb_Chr15g0077581 Lupinus albus HOM05D002798 ORTHO05D003052 1.5e-07 62.4 126 29.4
Sp3g04540 Schrenkiella parvula HOM05D002798 ORTHO05D003052 1.5e-07 62.4 168 27.4
Cre13.g592100 Chlamydomonas reinhardtii HOM05D002798 ORTHO05D003052 1.9e-07 62.0 97 35.1
MCO04G095 Micromonas commoda HOM05D002798 ORTHO05D003052 1.9e-07 62.0 181 27.6
Rhsim11G0092600 Rhododendron simsii HOM05D002798 ORTHO05D003052 1.9e-07 62.0 126 30.2
RcHm_v2.0_Chr3g0456661 Rosa chinensis HOM05D002798 ORTHO05D003052 1.9e-07 62.0 125 28.8
FAN02G3774 Fragaria x ananassa HOM05D002798 ORTHO05D003052 2.5e-07 61.6 125 29.6
GSVIVG01031198001 Vitis vinifera HOM05D002798 ORTHO05D003052 2.5e-07 61.6 126 30.2
FAN14G2831 Fragaria x ananassa HOM05D002798 ORTHO05D003052 3.3e-07 61.2 125 28.8
MD04G1196300 Malus domestica HOM05D002798 ORTHO05D003052 4.3e-07 60.8 126 28.6
THA.LOC104802783 Tarenaya hassleriana HOM05D002798 ORTHO05D003052 4.3e-07 60.8 125 28.8
Aqoxy5G02587 Aquilegia oxysepala HOM05D002798 ORTHO05D003052 5.6e-07 60.5 157 26.1
Dinv38632 Davidia involucrata HOM05D002798 ORTHO05D003052 5.6e-07 60.5 115 31.3
QL10p021033 Quercus lobata HOM05D002798 ORTHO05D003052 7.3e-07 60.1 125 29.6
EL10Ac4g09839 Beta vulgaris HOM05D002798 ORTHO05D003052 9.6e-07 59.7 125 27.2
Duzib068G0984 Durio zibethinus HOM05D002798 ORTHO05D003052 1.6e-06 58.9 180 26.1
Sopen07g030360 Solanum pennellii HOM05D000590 ORTHO05D006658 2.1e-06 58.5 103 35.0
Solyc07g062100.4 Solanum lycopersicum HOM05D000590 ORTHO05D006658 2.8e-06 58.2 104 33.7
DCAR_005407 Daucus carota HOM05D002798 ORTHO05D003052 3.6e-06 57.8 176 26.7
MD12G1209300 Malus domestica HOM05D002798 ORTHO05D003052 3.6e-06 57.8 155 25.2
PGSC0003DMG400007086 Solanum tuberosum HOM05D000590 ORTHO05D006658 3.6e-06 57.8 60 48.3
vmacro01538 Vaccinium macrocarpon HOM05D002798 ORTHO05D003052 3.6e-06 57.8 107 34.6
CAN.G481.41 Capsicum annuum HOM05D002415 ORTHO05D002522 4.8e-06 57.4 58 46.6
FvH4_3g45030 Fragaria vesca HOM05D006854 ORTHO05D017963 6.2e-06 57.0 82 34.1
FAN11G2338 Fragaria x ananassa HOM05D006854 ORTHO05D017963 6.2e-06 57.0 82 34.1
QL03p017951 Quercus lobata HOM05D002798 ORTHO05D003052 6.2e-06 57.0 136 25.7
Pp3c2_5960 Physcomitrium patens HOM05D000082 ORTHO05D007743 8.1e-06 56.6 69 39.1
SGA_v2.0_scaffold130G34256 Striga asiatica HOM05D000590 ORTHO05D006658 8.1e-06 56.6 50 52.0


User provided reference genes

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